Table 4 of Freeman, Mol Vis 2011; 17:1355-1372.

Table 4. Genes displaying cis-acting QTLs on Chr 2 between 169 and 182 Mb.

ID Symbol Description ProbeSetID / RecordID Probe target Ch Mb UniGene ID QTL Chr QTL Mb Locus at Peak Max LRS Mean expression
1 Tshz2 teashirt zinc finger family member 2 ILMN_1246021 intron 2 2 169.6 Mm.315789 2 169.58 rs13476910 17.67 7.75
2 Tshz2 teashirt zinc finger family member 2 ILMN_1256408 exon 4 2 169.71 Mm.315789 2 168.79 rs6160839 17.9 8.01
3 Tshz2 teashirt zinc finger family member 2 ILMN_1243934 putative intergenic 2 169.74 Mm.315789 2 168.79 rs6160839 62.16 8.46
4 Dok5 docking protein 5 ILMN_2615070 exon 8 2 170.7 Mm.41633 2 173.43 rs3664044 17.35 7.95
5 Rae1 RAE1 RNA export 1 ILMN_2713130 3′ UTR 2 172.84 Mm.4113 2 172.56 rs3668691 45.41 10.87
6 RP23–330D3.5 novel KRAB box and zinc finger, C2H2 type domain containing protein ILMN_2536053 intron 4 2 174.89 Mm.452080 2 172.56 rs3668691 15.55 8.14
7 Cdh4 cadherin 4 ILMN_1255939 exon 16 2 179.63 Mm.382094 2 179.26 rs6187766 30.81 7.88
8 AW120700   ILMN_1260036 putative intergenic 2 179.63   2 179.26 rs6187766 48.19 11.07
9 Ogfr opioid growth factor receptor ILMN_1250450 3′ UTR 2 180.33 Mm.250418 2 180.83 rs6305540 34.82 11.04
10 Bhlhb4 basic helix–loop–helix domain containing, class B4 ILMN_1227215 distal 3′ UTR 2 180.51 Mm.134062 2 179.7 rs3703298 31.4 8.44
11 Kcnq2 potassium voltage-gated channel, subfamily Q, member 2 ILMN_1241017 intron 8 2 180.84 Mm.40615 2 180.83 rs6305540 76.68 7.73
12 6330503H08Rik   ILMN_2564036 putative intergenic 2 180.87
2 180.83 rs6305540 23.9 8.18
13 2700038C09Rik RIKEN cDNA 2700038C09 gene ILMN_2590015 5′ UTR 2 180.92 Mm.213943 2 180.83 rs6305540 16.9 9.73
14 Rtel1 regulator of telomere elongation helicase 1 ILMN_2641946 3′ UTR 2 181.09 Mm.11333 2 180.83 rs6305540 68.62 8.6
15 Arfrp1 ADP-ribosylation factor related protein 1 ILMN_2631745 exon 6 (high cisQTL in BXD Striatum Illumina with D high allele, no SNP) 2 181.1 Mm.87720 2 180.83 rs6305540 16.15 11.23
16 Dnajc5 DnaJ (Hsp40) homolog, subfamily C, member 5 ILMN_2501026 putative intergenic 2 181.29 Mm.140761 2 180.83 rs6305540 117.47 14.35
17 Tcea2 transcription elongation factor A (SII), 2 ILMN_2777609 3′ UTR 2 181.42 Mm.24245 2 180.83 rs6305540 70.53 10.58
18 2810410D24Rik RIKEN cDNA 2810410D24 gene ILMN_2493144 putative intergenic 2 181.6 Mm.432139 2 179.7 rs3703298 22.87 7.77

Eighteen records were observed to have cis-acting quantitative trait loci (QTL) on chromosome 2 between 169 and 182 Mb. Eighteen gene symbols are displayed in the table as well as the description of the gene, Probe Set Identification, probe target, chromosomal location, Megabase, UniGene identification, chromosome in which QTL is located, locus at peak, the maximum likelihood ratio statistic (LRS), and mean expression.

Freeman, Mol Vis 2011; 17:1355-1372. http://www.molvis.org/molvis/v17/a153

©2011 Molecular Vision http://www.molvis.org/molvis/

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