Table 3 of
Landreville, Mol Vis 2011; 17:1324-1333. Table 3 of
Landreville, Mol Vis 2011; 17:1324-1333.
Table 3. Upregulated genes from the TP31 cell line subtracted library.
| Gene | Chromosomal location | GenBank accession # | Biological process | Redundancy | Microarray fold-change UM/UVM* |
|---|---|---|---|---|---|
| Acidic (leucine-rich) nuclear phosphoprotein 32 member E (ANP32E) | 1q21.2 | NM_030920 | Apoptosis | 1 | 1.59 |
| Alkylglycerone phosphate synthase (AGPS) | 2q31.2 | NM_003659 | Lipid metabolism | 2 | 2.85 |
| Anillin actin binding protein (ANLN) | 7p14 | NM_018685 | Cell division | 4 | 2.69 |
| ATP synthase H+ transporting mitochondrial F0 complex subunit G (ATP5L) | 11q23.3 | NM_006476 | ATP synthesis | 1 | 11.20 |
| Calumenin (CALU) | 7q32.1 | NM_001219 | Calcium ion binding | 2 | 1.43 |
| Chromosome 6 open reading frame 211 (C6orf211) | 6q25.1 | NM_024573 | Unknown | 2 | 1.72 |
| Chromosome 6 open reading frame 62 (C6orf62) | 6p22.3 | NM_030939 | Unknown | 1 | 0.43 |
| Chromosome 7 open reading frame 64 (C7orf64) | 7q21.2 | NM_032120 | Unknown | 2 | 1.53 |
| Cytoskeleton associated protein 5 (CKAP5) | 11p11.2 | NM_014756 | Cell division | 5 | 4.13 |
| Denticleless homolog (DTL) | 1q32 | NM_016448 | Protein ubiquitination | 1 | 3.79 |
| Family with sequence similarity 126 member B (FAM126B) | 2q33.1 | NM_173822 | Unknown | 1 | 1.28 |
| Family with sequence similarity 35 member A (FAM35A) | 10q23.2 | NM_019054 | Unknown | 1 | 1.02 |
| Family with sequence similarity 63 member B (FAM63B) | 15q21.3 | NM_001040450 | Unknown | 1 | 0.92 |
| Glutamate-ammonia ligase (GLUL) | 1q31 | NM_002065 | Cell proliferation | 1 | 1.65 |
| HEAT repeat containing 5A (HEATR5A) | 14q12 | NM_015473 | Unknown | 2 | 1.63 |
| Histone deacetylase 3 (HDAC3) | 5q31 | NM_003883 | Chromatin modification | 1 | 3.03 |
| Human T-cell leukemia virus type 1 binding protein 1 (TAX1BP1) | 7p15 | NM_006024 | Apoptosis | 1 | 2.03 |
| Integrin alpha 6 subunit (ITGA6) | 2q31.1 | NM_000210 | Cell adhesion | 2 | 1.68 |
| Interleukin 1 receptor antagonist (IL1RN) | 2q14.2 | NM_173842 | Inflammatory response | 5 | 1.71 |
| KIAA2018 | 3q13.2 | NM_001009899 | Unknown | 2 | 1.62 |
| Melanocortin 3 receptor (MC3R) | 20q13.2 | NM_019888 | G-protein signaling | 1 | 1.81 |
| Microphthalmia-associated transcription factor (MITF) | 3p14.2 | NM_198159 | Melanocyte differentiation | 2 | 0.48 |
| Multiple coagulation factor deficiency protein 2 (MCFD2) | 2p21 | NM_139279 | Vesicule-mediated transport | 1 | 1.37 |
| MutL homolog 3 (MLH3) | 14q24.3 | NM_014381 | DNA repair | 2 | 1.43 |
| Oligosaccharyltransferase complex subunit (OSTC) | 4q25 | NM_021227 | Protein glycosylation | 1 | 4.31 |
| Peroxisome proliferator-activated receptor gamma coactivator 1 (PPARGC1) | 4p15.1 | NM_013261 | Cellular respiration | 1 | 0.51 |
| Pleckstrin homology domain containing family A member 8 (PLEKHA8) | 7p21-p11.2 | NM_032639 | Protein transport | 1 | 1.38 |
| Potassium voltage-gated channel, Shab-related subfamily member 1 (KCNB1) | 20q13.2 | NM_004975 | Potassium ion transport | 1 | 1.84 |
| Proteasome 26S subunit non-ATPase 2 (PSMD2) | 3q27.1 | NM_002808 | Protein ubiquitination | 1 | 1.40 |
| Proteasome maturation protein (POMP) | 13q12.3 | NM_015932 | Proteasome assembly | 1 | 3.16 |
| Protein phosphatase 3 catalytic subunit alpha isozyme (PPP3CA) | 4q24 | NM_000944 | Protein phosphorylation | 1 | 1.51 |
| Required for meiotic nuclear division 5 homolog A (RMND5A) | 2p11.2 | NM_022780 | Cell division | 1 | 1.77 |
| Topoisomerase (DNA) II alpha (TOP2A) | 17q21-q22 | NM_001067 | DNA replication | 1 | 19.52 |
| Translocase of inner mitochondrial membrane 17 homolog A (TIMM17A) | 1q32.1 | NM_006335 | Mitochondrial protein transport | 1 | 1.63 |
| Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta polypeptide (YWHAB) | 20q13.1 | NM_003404 | Ras signal transduction | 1 | 4.00 |
| Vaccinia related kinase 1 (VRK1) | 14q32 | NM_003384 | Protein phosphorylation | 2 | 6.53 |
| Zinc finger, HIT-type containing 6 (ZNHIT6) | 1p22.3 | NM_017953 | Ribosome biogenesis | 1 | 3.89 |