Molecular Vision: Paylakhi, Mol Vis 2011; 17:1209-1221. Table 3

Table 3. Microarray identified genes with changed expression due to PITX2 siRNA treatments.

Genes identified based on B statistic					Genes identified based on twofold change cut-off			Genes identified based on rank in fold change without cut-off			All genes selected by one or more protocol
(Protocol 1)					(Protocol 2)			(Protocol 3)			(protocol 1, 2, +/or 3)
Gene	B value	P value	mRNA fold change		Gene	mRNA fold change		Gene	mRNA fold change		Gene	mRNA fold change*		P 1	P 2	P 3
			Down	Up		Down	Up		Down	Up		Down	Up
DIRAS3	5.9	0.013848	4.2		DIRAS3	3.3		DIRAS3	4.2		DIRAS3	3.9		X	X	X
CXCL6	4.1	0.019535	3.1		CXCL6	2.9		CFL2		3.5	CXCL6	3.3		X	X	X
SAMD5	4.4	0.014213	3		CFL2		2.8	SAMD5	3		CFL2		3.2		X	X
XYLT1	4.4	0.082004	2.9		KHDRBS3	2.7		CXCL6	3		SAMD5	2.9		X	X	X
KHDRBS3	4.6	0.008829	2.8		SAMD5	2.7		ALDH1A1	2.5		XYLT1	2.9		X
ALDH1A1	3.6	0.030613	2.5		ADAMTS5		2.5	CBFB	2.3		KHDRBS3	2.8		X	X
C7orf47	2.7	0.048148	2.3		C7orf47	2.4		PLP2		2.2	ALDH1A1	2.5		X		X
LOC653602	4.2	0.040201		2.3	TMEM65		2.4	TMEM65		2.1	ADAMTS5		2.5		X
CBFB	2.1	0.054419	2.3		CBFB	2.4		AUH		2	PATZ1	2.4			X
C7orf63	4.2	0.070604		2.2	PATZ1	2.4		MEIS2		2	CBFB	2.4		X	X	X
PLP2	3.2	0.02711		2.2	LOC653602		2.3	BHLHB3	2		C7orf47	2.3			X	X
GRP	3.6	0.036988	2.1		BBS5		2.2	PIP4K2B		1.9	LOC653602		2. 3		X	X
PMS2	3.82	0.032		2.1	CTXN1		2.2	FLG	1.9		TMEM65		2.3		X	X
SMC2	3.5	0.063532	2		MEIS2		2.2	LIN7A	1.8		PLP2		2.2	X		X
MEIS2	3.2	0.068199		2				HAPLN1	1.7		MEIS2		2.1	X	X	X
BHLHB3	3.3	0.024836	2					GALNT1	1.7		CTXN1		2.2		X
GBP2	3	0.039074		2				QDPR		1.6	C7orf63		2.2	X
IRS2	3.4	0.005579	2					PMS2		1.5	BBS5		2.2		X
LMNB1	3.5	0.00633	2					NOMO2		1.5	GRP	2.1		X
SLC12A2	2.9	0.04161	1.9					MICALL2		1.4	GBP2		2	X
CEBPG	2.5	0.061234		1.9							BHLHB3	2		X		X
CD4	2.9	0.039381		1.8							LMNB1	2		X
ELK3	2.6	0.012323	1.8								IRS2	2		X
FAM70A	2.9	0.039441	1.8								SMC2	2		X
GBP5	4.3	0.032596		1.8							AUH		2			X
PTPRR	2.4	0.013709		1.8							PIP4K2B		1.9			X
											CEBPG		1.9	X
											SLC12A2	1.9		X
											FLG	1.9				X
											CD4		1.8	X
											ELK3	1.8		X
											LIN7A	1.8				X
											PTPRR		1.8	X
											FAM70A	1.8		X
											GBP5		1.8	X
											PMS2		1.8	X		X
											GALNT1	1.7				X
											HAPLN1	1.7				X
											QDPR		1.6			X
											NOMO2		1.5			X
											MICALL2		1.4			X