Table 2 of Mitra, Mol Vis 2010; 16:828-842.

Table 2. Down-regulated genes identified by microarray post EpCAM Knock-down in Y79

Gene classification/description Gene symbol Fold change GenBank accession Chromosome location
Homo sapiens fibroblast growth factor 9 (glia-activating factor) FGF9 −1.09836 [NM_002010] 13q12.11
Homo sapiens v-fos FBJ murine osteosarcoma viral oncogene homolog (FOS) FOS −2.42289 [NM_005252] 14q24.3
Homo sapiens jun oncogene (JUN) JUN −1.65468 [NM_002228] 1p32.1
Homo sapiens E2F transcription factor 3 (E2F3), mRNA E2F3 −0.57954 [NM_001949] 6p22.3
Homo sapiens proliferating cell nuclear antigen (PCNA), transcript variant 1, mRNA PCNA −1.53558 [NM_002592] 20p12.3
Homo sapiens high mobility group AT-hook 2 (HMGA2), transcript variant 1, mRNA HMGA2 −1.70144 [NM_003483] 12q14.3
Homo sapiens hairy and enhancer of split 1, (Drosophila) (HES1), mRNA HES1 −2.41369 [NM_005524] 3q29
Homo sapiens cyclin D3 (CCND3), mRNA CCND3 −2.27265 [NM_001760] 6p21.1
Homo sapiens growth arrest and DNA-damage-inducible, alpha (GADD45A), mRNA GADD45A −1.0626 [NM_001924] 1p31.3
Homo sapiens ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) (ELAVL1), mRNA ELAVL1 −1.04274 [NM_001419] 19p13.2
Homo sapiens nuclear receptor coactivator 1 (NCOA1), transcript variant 3, mRNA NCOA1 −1.24715 [NM_147233] 2p23.3
Homo sapiens electron-transferring-flavoprotein dehydrogenase (ETFDH), nuclear gene encoding mitochondrial protein, mRNA ETFDH −1.69508 [NM_004453] 4q32.1
Homo sapiens myotubularin related protein 9 (MTMR9), mRNA MTMR9 −1.26689 [NM_015458] 8p23.1
Homo sapiens protein tyrosine phosphatase type IVA, member 1 (PTP4A1), mRNA PTP4A1 −1.18325 [NM_003463] 6q12
Homo sapiens CCHC-type zinc finger, nucleic acid binding protein (CNBP), mRNA CNBP −1.07756 [NM_003418] 3q21.3
Homo sapiens enolase 1, (alpha) (ENO1), mRNA ENO1 1.24292 [NM_001428] 1p36.23
Homo sapiens insulin-like growth factor 1 (somatomedin C) (IGF1), mRNA IGF1 −1.41077 [NM_000618] 12q23.2
Homo sapiens Ewing sarcoma breakpoint region 1, mRNA (cDNA clone MGC:8607 IMAGE:2961279) EWSR1 −1.10194 [BC000527] 22q12.2
Homo sapiens sprouty-related, EVH1 domain containing 1 (SPRED1), mRNA SPRED1 −1.28822 [NM_152594] 15q14
Cell invasion
Homo sapiens cell division cycle 42 (GTP binding protein, 25 kDa) (CDC42), transcript variant 2, mRNA CDC42 −0.79444 [NM_044472] 1p36.12
Homo sapiens matrix metallopeptidase 2 (gelatinase A, 72 kDa gelatinase, 72 kDa type IV collagenase) (MMP2), mRNA MMP2 −0.67629 [NM_004530] 16q12.2
Homo sapiens plexin A1 (PLXNA1), mRNA PLXNA1 −1.07618 [NM_032242] 3q21.3
Homo sapiens protein tyrosine phosphatase type IVA, member 1 (PTP4A1), mRNA PTP4A1 −1.18325 [NM_003463] 6q12
Homo sapiens MADS box transcription enhancer factor 2, polypeptide A (myocyte enhancer factor 2A) (MEF2A), mRNA MEF2A −1.17285 [NM_005587] 15q26.3
Homo sapiens methylthioadenosine phosphorylase (MTAP), mRNA MTAP −1.75238 [NM_002451] 9p21.3
Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ), transcript variant 2, mRNA YWHAZ −1.02872 [NM_145690] 8q22.3
Homo sapiens dual specificity phosphatase 1 (DUSP1), mRNA DUSP1 −2.09785 [NM_004417] 5q35.1
Homo sapiens malignant T cell amplified sequence 1 (MCTS1), mRNA MCTS1 −1.16085 [NM_014060] Xq24
Homo sapiens RAP2C, member of RAS oncogene family (RAP2C), mRNA RAP2C −1.29212 [NM_021183] Xq26.2
Homo sapiens RAB8A, member RAS oncogene family (RAB8A), mRNA RAB8A −1.02394 [NM_005370] 19p13.12
Homo sapiens sarcospan (Kras oncogene-associated gene) (SSPN), mRNA SSPN −1.31047 [NM_005086] 12p12.1
Homo sapiens RAB1B, member RAS oncogene family (RAB1B), mRNA RAB1B −1.29331 [NM_030981] 11q13.1
Homo sapiens RAB15, member RAS onocogene family (RAB15), mRNA RAB15 −1.64564 [NM_198686] 14q23.3
Homo sapiens v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) (MYCN), mRNA MYCN −0.50087 [NM_005378] 2p24.3
Homo sapiens DnaJ (Hsp40) homolog, subfamily A, member 3 (DNAJA3), mRNA DNAJA3) −1.11925 [NM_005147] 16p13.3
Homo sapiens ornithine decarboxylase 1 (ODC1), mRNA ODC1 −1.56073 [NM_002539] 2p25.1
Homo sapiens gelsolin (amyloidosis, Finnish type) (GSN), transcript variant 2, mRNA GSN −1.1058 [NM_198252] 9q33.2
Homo sapiens BCL2-like 1 (BCL2L1), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA BCL2L1 −1.06389 [NM_001191] 20q11.21
Homo sapiens high-mobility groupbox 1 (HMGB1), mRNA HMGB1 −1.00917 [NM_002128] 13q12.3
Cell cycle and differentiation
Homo sapiens bol, boule-like (Drosophila) (BOLL), transcript variant 2, mRNA BOLL −1.03287 [NM_033030] 2q33.1
Homo sapiens tubulin, epsilon 1 (TUBE1), mRNA TUBE1 −1.10675 [NM_016262] 6q21
Homo sapiens eukaryotic translation elongation factor 1 epsilon 1 (EEF1E1), mRNA [NM_004280] EEF1E1 −1.04824 [NM_004280] 6p24.3
Homo sapiens MAD1 mitotic arrest deficient-like 1 (yeast) (MAD1L1), transcript variant 1, mRNA MAD1L1 −1.48937 [NM_003550] 7p22.3
Homo sapiens MYC-associated zinc finger protein (purine-binding transcription factor) (MAZ), transcript variant 1, mRNA MAZ −1.00923 [NM_002383] 16p11.2
Homo sapiens O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) (OGT), transcript variant 1, mRNA OGT −1.2658 [NM_181672] Xq13.1
Homo sapiens U2 small nuclear RNA auxiliary factor 1 (U2AF1), transcript variant a, mRNA U2AF1 −1.02281 [NM_006758] 21q22.3
Homo sapiens tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase (TRMU), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA TRMU −1.24944 [NM_018006] 22q13.31
Homo sapiens CNDP dipeptidase 2 (metallopeptidase M20 family) (CNDP2), mRNA CNDP2 −1.29951 [NM_018235] 18q22.3
Homo sapiens pinin, desmosome associated protein (PNN), mRNA PNN −1.02816 [NM_002687] 14q21.1
Homo sapiens pericentriolar material 1 (PCM1), mRNA PCM1 −1.05392 [NM_006197] 8p22
Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL). PBX1 −1.42582 [NM_002585] 1q23.3
Homo sapiens oxidative stress induced growth inhibitor family member 2 (OSGIN2), mRNA OSGIN2 −1.15358 [NM_004337] 8q21.3
Homo sapiens zinc finger RNA binding protein (ZFR), mRNA ZFR −1.10655 [NM_016107] 5p13.3
Homo sapiens PRP4 pre-mRNA processing factor 4 homolog B (yeast) (PRPF4B), mRNA PRPF4B −1.10445 [NM_003913] 6p25.2
Homo sapiens FUS interacting protein (serine/arginine-rich) 1 (FUSIP1), transcript variant 2, mRNA FUSIP1 −1.45444 [NM_054016] 1p36.11
Homo sapiens basic leucine zipper and W2 domains 1 (BZW1), mRNA BZW1 −1.07595 [NM_014670] 2q33.1
Homo sapiens cyclin-dependent kinase 6 (CDK6), mRNA CDK6 −0.5 [NM_001259] 7q21.2
Homo sapiens cyclin-dependent kinase 4 (CDK4), mRNA CDK4 −0.513 [NM_000075] 12q14.1