Table 1 of Zhu, Mol Vis 2010; 16:740-755.

Table 1. Differentially expressed genes between inferior and superior retina of control (normoxic) C57BL/6J mice.

Symbol Description RefSeq p value FD (I/S)
Anatomic structure development (GO:0009653)
Vax2 ventral anterior homeobox containing gene 2 NM_011912 0.021 1.840
Sprr2b small proline-rich protein 2B NM_011469 0.012 1.630
Vcan versican NM_001081249 0.001 1.598
Slc26a4 solute carrier family 26, member 4 NM_011867 0.008 1.598
Nr2f2 nuclear receptor subfamily 2, group F, member 2 NM_009697 0.002 −1.564
Efnb2 ephrin B2 NM_010111 0.015 −1.625
Tbx5 T-box 5 NM_011537 0.0002 −2.087
Sensory perception (GO:0007600)
Opn1sw opsin 1 (cone pigments), short-wave-sensitive NM_007538 0.038 1.762
V1rb8 vomeronasal 1 receptor, B8 NM_053229 0.043 −1.508
Olfr1416 olfactory receptor 1416 NM_147038 0.041 −1.577
Opn1mw opsin 1 (cone pigments), medium-wave-sensitive NM_008106 0.010 −1.644
Olfr652 olfactory receptor 652 NM_147048 0.017 −1.652
Catalytic activity
Mme membrane metalloendopeptidase NM_008604 0.031 2.197
Adh6b alcohol dehydrogenase 6B (class V) ENSMUST00000090166 0.017 1.516
Rdh16 retinol dehydrogenase 16 NM_009040 0.004 −1.684
Alpk2 alpha-kinase 2 ENSMUST00000035548 0.017 −1.979
G protein-coupled receptor
Gpr137b G protein-coupled receptor 137B NM_031999 0.007 1.541
Gprc5b G protein-coupled receptor C5B NM_022420 0.025 1.526
Amino acid transporter
Slc7a11 solute carrier family 7 NM_011990 0.035 1.756
Cell migration
Sst somatostatin NM_009215 0.016 1.666
Translation regulation
Igf2bp2 insulin-like growth factor 2 mRNA binding protein 2 NM_183029 0.024 −1.544
Inductin of apoptosis
Khdc1a KH domain containing 1A NM_183322 0.037 −1.575
Unknown function
Snhg1 small nucleolar RNA host gene 1 AK051045 0.007 1.710

predicted gene, EG624256 XR_034994 0.006 1.529

predicted gene, EG668725 DQ386867 0.039 1.510
Abi3bp ABI gene family, member 3 (NESH) binding protein NM_001014423 0.028 1.505

RIKEN cDNA A530032D15Rik gene BC094285 0.007 −1.503
Gm1381 gene model 1381, (NCBI) BC147167 0.005 −1.523
Serpina1b serine preptidase inhibitor, clade A member 1B NM_009244 0.025 −1.557
Gm1862 gene model 1862, (NCBI) XM_001478226 0.031 −1.576

predicted gene, OTTMUSG00000001136 XM_001005073 0.007 −1.868

Genes were grouped into several functional categories using gene ontology analysis. Categories with GO number are considered specific functional groups. Abbreviations: RefSeq represents NCBI reference sequence; FD represents fold difference; GO represents gene ontology.

Zhu, Mol Vis 2010; 16:740-755. http://www.molvis.org/molvis/v16/a84

©2010 Molecular Vision http://www.molvis.org/molvis/

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