Table 1 of Fingert, Mol Vis 2010; 16:596-601.
Table 1. SNP genotyping results.
p-values (allele frequency) | p-values (genotype frequency) | |||||||
---|---|---|---|---|---|---|---|---|
Gene |
SNP ID |
Location (bp) |
Spacing (bp) |
Minor Allele Frequency |
NL versus Steroid Responders |
NL versus POAG |
NL versus Steroid Responders |
NL versus POAG |
SFRS3 | rs7759778 | 36660245 | 10174 | 0.25 | 0.084 | 0.77 | 0.046 | 0.10 |
rs1406945 | 36670419 | 7925 | 0.283 | 0.027 | 0.043 | 0.033 | 0.036 | |
rs7344 | 36678344 | 10783 | 0.217 | 0.11 | 0.11 | 0.011 | 0.073 | |
rs13202984 | 36689127 | 0.292 | 0.15 | 0.27 | 0.33 | 0.44 | ||
SFRS5 | rs7153985 | 69296240 | 9254 | 0.117 | 0.13 | 0.59 | 0.36 | 0.17 |
rs3104 | 69305494 | 4185 | 0.317 | 0.86 | 0.83 | 0.84 | 0.94 | |
rs8019166 | 69309679 | 3579 | 0.195 | 0.34 | 0.86 | 0.26 | 0.74 | |
rs4646296 | 69313258 | 4853 | 0.059 | 0.46 | 0.71 | 0.38 | 0.87 | |
rs17556915 | 69318111 | 0.175 | 0.30 | 0.41 | 0.37 | 0.64 | ||
SFRS9 | rs2235222 | 119376576 | 3096 | 0.13333 | 0.37 | 0.94 | 0.53 | 0.60 |
rs3847971 | 119379672 | 4985 | 0.35833 | 0.63 | 0.48 | 0.74 | 0.76 | |
rs9040 | 119384657 | 992 | 0.3 | 0.56 | 0.32 | 0.39 | 0.58 | |
rs7027 | 119385649 | 10520 | 0.15 | 0.27 | 0.14 | 0.68 | 0.37 | |
rs540520 | 119396169 | 0.28333 | 0.30 | 0.34 | 0.36 | 0.54 | ||
FKBP4 | rs2968909 | 2768125 | 3706 | 0.15833 | 0.013 | 0.24 | 0.40 | 0.47 |
rs3759411 | 2771831 | 6156 | 0.1 | 0.051 | 0.51 | 0.87 | 0.67 | |
rs1981655 | 2777987 | 0.05833 | 0.22 | 0.73 | 0.18 | 0.72 | ||
FKBP5 | rs755658 | 35657648 | 12970 | 0.05833 | 0.17 | 0.83 | 0.35 | 0.92 |
rs3798346 | 35670618 | 334 | 0.325 | 0.40 | 0.55 | 0.66 | 0.60 | |
rs9366890 | 35670952 | 4108 | 0.175 | 0.92 | 0.87 | 0.96 | 0.97 | |
rs9296158 | 35675060 | 2199 | 0.24167 | 0.56 | 0.55 | 0.56 | 0.59 | |
rs4713899 | 35677259 | 6206 | 0.15 | 0.92 | >0.99 | 0.74 | 0.55 | |
rs737054 | 35683465 | 3515 | 0.225 | 0.26 | 0.68 | 0.24 | 0.26 | |
rs3777747 | 35686980 | 10068 | 0.43333 | 0.54 | 0.90 | 0.41 | 0.74 | |
rs9380524 | 35697048 | 28515 | 0.14167 | 0.23 | 0.24 | 0.46 | 0.46 | |
rs6912833 | 35725563 | 4336 | 0.24167 | 0.88 | 0.46 | 0.18 | 0.67 | |
rs17614642 | 35729899 | 0.13333 | >0.99 | >0.99 | 0.64 | 0.81 | ||
NR3C1 | rs174048 | 142630597 | 4611 | 0.18333 | 0.30 | 0.19 | 0.40 | 0.26 |
rs17287745 | 142635208 | 2006 | 0.39167 | 0.43 | 0.90 | 0.67 | 0.57 | |
rs17287758 | 142637214 | 12202 | 0.15833 | 0.91 | 0.79 | 0.44 | 0.45 | |
rs17209251 | 142649416 | 1085 | 0.20833 | 0.52 | 0.77 | 0.75 | 0.88 | |
rs10482672 | 142672726 | 4762 | 0.14167 | 0.59 | 0.60 | 0.51 | 0.62 | |
rs33388 | 142677488 | 26078 | 0.45833 | 0.76 | 0.42 | 0.68 | 0.39 | |
rs2918418 | 142703566 | 7003 | 0.175 | 0.41 | 0.15 | 0.64 | 0.37 | |
rs4912905 | 142710569 | 25628 | 0.23333 | 0.93 | 0.15 | 0.41 | 0.27 | |
rs2963155 | 142736197 | 11736 | 0.3 | 0.11 | 0.34 | 0.19 | 0.13 | |
rs9324921 | 142747933 | 13827 | 0.05833 | 0.72 | 0.35 | 0.88 | 0.39 | |
rs10482616 | 142761760 | 10917 | 0.125 | 0.67 | 0.54 | 0.53 | 0.57 | |
rs9324924 | 142772677 | 166 | 0.31667 | 0.52 | 0.11 | 0.75 | 0.18 | |
rs7701443 | 142772843 | 2075 | 0.29167 | 0.94 | 0.24 | 0.98 | 0.45 | |
rs4244032 | 142774918 | 1807 | 0.21667 | 0.70 | 0.44 | 0.76 | 0.51 | |
rs4607376 | 142776725 | 4948 | 0.45 | 0.19 | >0.99 | 0.30 | 0.73 | |
rs13182800 | 142781673 | 4422 | 0.16667 | 0.70 | 0.76 | 0.80 | 0.79 | |
rs12054797 | 142786095 | 1130 | 0.24167 | 0.45 | 0.090 | 0.74 | 0.31 | |
rs12656106 | 142787225 | 1915 | 0.3 | 0.62 | 0.15 | 0.85 | 0.25 | |
rs12656106 | 142789140 | 8660 | 0.4833 | 0.82 | 0.67 | 0.96 | 0.89 | |
rs12521436 | 142797800 | 699 | 0.175 | 0.36 | >0.99 | 0.29 | 0.97 | |
rs4912913 | 142798499 | 0.4833 | 0.94 | >0.99 | 0.37 | 0.31 |