Table 4 of Greco, Mol Vis 2010; 16:2109-2120. Table 4 of Greco, Mol Vis 2010; 16:2109-2120.
Table 4. Transcripts with highest under- and overexpression in the iHCE.
| Full Name | Symbol | Entrez gene ID | Log2 R |
|---|---|---|---|
| Over-represented genes | |||
| ribonucleotide reductase M2 | RRM2 | 6241 | 6.58 |
| cyclin B1 | CCNB1 | 891 | 5.58 |
| maternal embryonic leucine zipper kinase | MELK | 9833 | 5.54 |
| aurora kinase A | AURKA | 6790 | 5.53 |
| discs, large (Drosophila) homolog-associated protein 5 | DLGAP5 | 9787 | 5.38 |
| GTP cyclohydrolase 1 | GCH1 | 2643 | 5.34 |
| Epithelial cell adhesion molecule | EPCAM | 4072 | 5.34 |
| Dickkopf homolog 1 (X. laevis) | DKK1 | 22943 | 5.25 |
| cyclin-dependent kinase inhibitor 3 | CDKN3 | 1033 | 5.12 |
| topoisomerase (DNA) II alpha 170 kDa | TOP2A | 7153 | 5.10 |
| keratin 81 | KRT81 | 3887 | 5.04 |
| neuropilin (NRP) and tolloid (TLL)-like 2 | NETO2 | 81831 | 5.02 |
| NDC80 homolog, kinetochore complex component (S. cerevisiae) | NDC80 | 10403 | 5.02 |
| centrosomal protein 55 kDa | CEP55 | 55165 | 4.97 |
| ZW10 interactor | ZWINT | 11130 | 4.94 |
| interleukin 6 (interferon, beta 2) | IL6 | 3569 | 4.94 |
| Forkhead box A1 | FOXA1 | 3169 | 4.92 |
| cell division cycle 20 homolog (S. cerevisiae) | CDC20 | 991 | 4.91 |
| budding uninhibited by benzimidazoles 1 homolog beta (yeast) | BUB1B | 701 | 4.89 |
| ELOVL family member 5, elongation of long chain fatty acids | ELOVL5 | 60481 | 4.86 |
| kinesin family member 23 | KIF23 | 9493 | 4.82 |
| meiosis-specific nuclear structural 1 | MNS1 | 55329 | 4.81 |
| geminin, DNA replication inhibitor | GMNN | 51053 | 4.78 |
| RAD51 associated protein 1 | RAD51AP1 | 10635 | 4.75 |
| thymidylate synthetase | TYMS | 7298 | 4.74 |
| kinesin family member 11 | KIF11 | 3832 | 4.74 |
| asp (abnormal spindle) homolog, microcephaly associated (Drosophila) | ASPM | 259266 | 4.72 |
| annexin A3 | ANXA3 | 306 | 4.71 |
| sarcoglycan, epsilon | SGCE | 8910 | 4.69 |
| epithelial cell transforming sequence 2 oncogene | ECT2 | 1894 | 4.64 |
| kinesin family member 15 | KIF15 | 56992 | 4.64 |
| myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 | MX1 | 4599 | 4.62 |
| v-myb myeloblastosis viral oncogene homolog (avian)-like 1 | MYBL1 | 4603 | 4.59 |
| kinesin family member 20A | KIF20A | 10112 | 4.58 |
| non-SMC condensin I complex, subunit G | NCAPG | 64151 | 4.56 |
| activated leukocyte cell adhesion molecule | ALCAM | 214 | 4.55 |
| hyaluronan-mediated motility receptor (RHAMM) | HMMR | 3161 | 4.51 |
| ISG15 ubiquitin-like modifier | ISG15 | 9636 | 4.50 |
| nicotinamide N-methyltransferase | NNMT | 4837 | 4.45 |
| bone marrow stromal cell antigen 2 | BST2 | 684 | 4.44 |
| Full Name | Symbol | Entrez gene ID | -Log2 R |
| Under-represented genes | |||
| keratin 14 | KRT14 | 3861 | 8.93 |
| aldehyde dehydrogenase 3 family, memberA1 | ALDH3A1 | 218 | 8.72 |
| keratin 12 | KRT12 | 3859 | 8.60 |
| gap junction protein, alpha 1, 43 kDa | GJA1 | 2697 | 8.46 |
| chemokine (C-X-C motif) ligand 14 | CXCL14 | 9547 | 8.37 |
| chromosome 10 open reading frame 116 | C10orf116 | 10974 | 8.28 |
| keratin 5 | KRT5 | 3852 | 8.23 |
| aldehyde dehydrogenase 1 family, member A1 | ALDH1A1 | 216 | 7.97 |
| clusterin | CLU | 1191 | 7.59 |
| S100 calcium binding protein A4 | S100A4 | 6275 | 7.47 |
| keratin 24 | KRT24 | 192666 | 7.46 |
| desmoglein 1 | DSG1 | 1828 | 7.29 |
| cartilage acidic protein 1 | CRTAC1 | 55118 | 6.88 |
| mal, T-cell differentiation protein | MAL | 4118 | 6.79 |
| tripartite motif-containing 29 | TRIM29 | 23650 | 6.71 |
| paired box 6 | PAX6 | 5080 | 6.60 |
| keratin 3 | KRT3 | 3850 | 6.57 |
| chloride channel accessory 2 | CLCA2 | 9635 | 6.23 |
| HOP homeobox | HOPX | 84525 | 6.17 |
| desmocollin 3 | DSC3 | 1825 | 5.99 |
| crystallin, alpha B | CRYAB | 1410 | 5.92 |
| chloride channel accessory 4 | CLCA4 | 22802 | 5.61 |
| insulin-like growth factor binding protein 2, 36 kDa | IGFBP2 | 3485 | 5.61 |
| secretoglobin, family 2A, member 1 | SCGB2A1 | 4246 | 5.58 |
| collagen, type XVII, alpha 1 | COL17A1 | 1308 | 5.47 |
| hepatic leukemia factor | HLF | 3131 | 5.38 |
| tripartite motif-containing 36 | TRIM36 | 55521 | 5.36 |
| keratin 15 | KRT15 | 3866 | 5.32 |
| keratin 4 | KRT4 | 3851 | 5.32 |
| v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog | KIT | 3815 | 5.09 |
| cadherin 13, H-cadherin (heart) | CDH13 | 1012 | 5.08 |
| calmodulin-like 3 | CALML3 | 810 | 5.04 |
| mal, T-cell differentiation protein-like | MALL | 7851 | 5.04 |
| uroplakin 1B | UPK1B | 7348 | 5.01 |
| PERP, TP53 apoptosis effector | PERP | 64065 | 4.97 |
| serpin peptidase inhibitor, clade F, member 1 | SERPINF1 | 5176 | 4.96 |
| lysophosphatidic acid receptor 6 | LPAR6 | 10161 | 4.96 |
| visinin-like 1 | VSNL1 | 7447 | 4.87 |
| LY6/PLAUR domain containing 3 | LYPD3 | 27076 | 4,83 |
| zinc finger, BED-type containing 2 | ZBED2 | 79413 | 4.80 |