Table 8 of Natoli, Mol Vis 2010; 16:1801-1822. Table 8 of Natoli, Mol Vis 2010; 16:1801-1822.
Table 8. Genes and ncRNA regulated by all groups exposed to light damage.
| Probeset ID | gene_assignment | Gene Symbol | RefSeq | p-value | FC (LD/C) | FC (PBMLD/C) | FC (SafLD/C) |
|---|---|---|---|---|---|---|---|
| 10889660 | aryl hydrocarbon receptor | Ahr | NM_013149 | 0.000824 | 3.58244 | 2.55846 | 3.37031 |
| 10860951 | asparagine synthetase | Asns | NM_013079 | 0.000175 | 3.65332 | 3.59864 | 3.94323 |
| 10770710 | activating transcription factor 3 | Atf3 | NM_012912 | 0.000312 | 14.6342 | 7.50088 | 12.4135 |
| 10906024 | ceramide kinase | Cerk | NM_001134861 | 0.002068 | −2.29855 | −2.22234 | −2.5033 |
| 10832934 | carbohydrate sulfotransferase 3 | Chst3 | NM_053408 | 0.001969 | 2.29346 | 4.51694 | 4.59235 |
| 10707832 | chondroitin sulfate synthase 1 | Chsy1 | NM_001106268 | 0.00196 | 2.19289 | 2.26058 | 2.38502 |
| 10847932 | DEP domain containing 7 | Depdc7 | NM_001029916 | 0.000836 | 6.30169 | 3.61235 | 5.17396 |
| 10800919 | early growth response 1 | Egr1 | NM_012551 | 0.000563 | 3.67302 | 2.5765 | 3.72215 |
| 10886121 | estrogen-related receptor beta | Esrrb | NM_001008516 | 0.001754 | −5.15267 | −3.39191 | −5.11574 |
| 10815026 | fibroblast growth factor 2 | Fgf2 | NM_019305 | 0.007852 | 3.69169 | 2.80573 | 3.69923 |
| 10787517 | growth differentiation factor 15 | Gdf15 | NM_019216 | 0.001794 | 3.10005 | 2.16424 | 2.90564 |
| 10747948 | glial fibrillary acidic protein | Gfap | NM_017009 | 0.000262 | 9.85794 | 5.10179 | 8.53628 |
| 10853554 | guanine nucleotide binding protein (G protein), gamma 11 | Gng11 | NM_022396 | 0.005371 | 2.18311 | 2.27589 | 2.84574 |
| 10910562 | GRAM domain containing 2 | Gramd2 | ENSRNOT00000036798 | 0.002852 | −2.09097 | −2.0499 | −2.15488 |
| 10780433 | interferon regulatory factor 9 | Irf9 | NM_001012041 | 0.000286 | 5.11681 | 2.54387 | 3.98553 |
| 10878112 | Jun oncogene | Jun | NM_021835 | 9.06E-05 | 4.10045 | 3.36326 | 4.42475 |
| 10715078 | kinesin family member 11 | Kif11 | ENSRNOT00000022555 | 0.001127 | 6.71624 | 2.93282 | 6.83808 |
| 10778179 | kringle containing transmembrane protein 1 | Kremen1 | NM_053649 | 0.00126 | 3.11252 | 2.52286 | 2.76134 |
| 10869693 | ladinin 1 | Lad1 | NM_001107942 | 0.00464 | 3.41587 | 2.87979 | 2.67287 |
| 10766809 | laminin, beta 3 | Lamb3 | ENSRNOT00000008440 | 0.00104 | −2.13971 | −2.06332 | −2.29965 |
| 10731493 | lipopolysaccharide-induced TNF factor | Litaf | NM_001105735 | 0.000499 | 3.76351 | 3.31786 | 4.20289 |
| 10832646 | similar to protocadherin 15 | LOC687745 | ENSRNOT00000000744 | 3.36E-05 | 2.16788 | 2.11147 | 2.13739 |
| 10797062 | MAK10 homolog, amino-acid N-acetyltransferase subunit | Mak10 | NM_133324 | 0.000456 | 2.14755 | 2.06752 | 2.46397 |
| 10863512 | methylenetetrahydrofolate dehydrogenase (NADP+ depende | Mthfd2 | NM_001109398 | 0.000137 | 3.72708 | 3.3414 | 4.70708 |
| 10855650 | pleckstrin homology domain containing, family A (phos | Plekha8 | NM_001109235 | 0.002149 | 3.46919 | 2.28802 | 3.33038 |
| 10935064 | proteolipid protein 1 | Plp1 | NM_030990 | 0.000277 | 2.15787 | 2.17668 | 2.84846 |
| 10894100 | phosphatidic acid phosphatase type 2c | Ppap2c | NM_139252 | 0.000148 | −3.99548 | −3.52564 | −3.53511 |
| 10933559 | protein phosphatase, EF-hand calcium binding domain 1 | Ppef1 | NM_001034935 | 0.000332 | −2.01839 | −2.93703 | −3.60683 |
| 10719616 | poliovirus receptor | PVR | NM_017076 | 0.003604 | 3.29581 | 2.1509 | 2.47285 |
| 10730098 | pyrroline-5-carboxylate synthetase (glutamate gamma-semi | Pycs | NM_001108524 | 7.37E-07 | 2.22935 | 2.00815 | 2.70701 |
| 10910805 | similar to c-myc promoter binding protein | RGD1562639 | XR_009072 | 0.001046 | 2.29737 | 2.17402 | 2.70157 |
| 10779602 | similar to hypothetical protein | RGD1563070 | NM_001134541 | 0.000934 | 3.13062 | 3.00334 | 3.19235 |
| 10705553 | similar to F-box only protein 27 | RGD1563982 | BC091204 | 0.007204 | 2.97912 | 2.13711 | 3.00821 |
| 10703144 | ribosomal protein S6 kinase polypeptide 2 | Rps6ka2 | ENSRNOT00000017809 | 0.000693 | 2.66827 | 2.6238 | 2.72578 |
| 10886621 | serine (or cysteine) peptidase inhibitor, clade A, mem | Serpina3n | NM_031531 | 0.003527 | 15.3578 | 5.40098 | 9.53535 |
| 10778620 | solute carrier family 1 (glutamate/neutral amino acid tra | Slc1a4 | NM_198763 | 0.000242 | 2.19034 | 2.4281 | 3.04173 |
| 10785326 | solute carrier family 25, member 30 | Slc25a30 | NM_001013187 | 0.00073 | 6.93878 | 4.0298 | 7.26229 |
| 10831976 | solute carrier family 26, member 8 | Slc26a8 | NM_001107614 | 0.016312 | 2.42603 | 2.62488 | 2.11542 |
| 10906608 | solute carrier family 38, member 2 | Slc38a2 | NM_181090 | 0.000719 | 2.11022 | 2.05736 | 2.24878 |
| 10756393 | solute carrier family 7 (cationic amino acid transporter, | Slc7a1 | NM_013111 | 0.001003 | 2.25745 | 2.49319 | 2.63527 |
| 10749372 | suppressor of cytokine signaling 3 | Socs3 | NM_053565 | 0.000246 | 8.40314 | 3.67692 | 7.52167 |
| 10747506 | signal transducer and activator of transcription 3 | Stat3 | NM_012747 | 0.000753 | 4.09848 | 2.61028 | 3.97928 |
| 10773496 | TNFAIP3 interacting protein 2 | Tnip2 | NM_001024771 | 0.000385 | 3.20709 | 2.40442 | 4.38234 |
| 10850775 | tribbles homolog 3 (Drosophila) | Trib3 | NM_144755 | 0.000162 | 2.59849 | 2.31869 | 2.98085 |
| 10859764 | — | — | 0.000806 | 3.363 | 2.50985 | 3.02341 | |
| 10768826 | — | — | 0.005642 | 2.21021 | 2.02298 | 2.28881 |