Table 6 of Natoli, Mol Vis 2010; 16:1801-1822. Table 6 of Natoli, Mol Vis 2010; 16:1801-1822.
Table 6. Genes and ncRNA regulated by saffron light damage and light damage.
| Probeset ID | Gene_assignment | Gene symbol | RefSeq | p-value | FC (LD/C) | FC (SafLD/C) |
|---|---|---|---|---|---|---|
| 10752839 | ADAM metallopeptidase with thrombospondin type 1 motif, | Adamts1 | NM_024400 | 0.003178 | 2.63853 | 2.72148 |
| 10765534 | ADAM metallopeptidase with thrombospondin type 1 motif, 4 | Adamts4 | AB042272 | 0.005095 | 2.26079 | 2.2735 |
| 10811900 | angiotensinogen (serpin peptidase inhibitor, clade A, member | Agt | NM_134432 | 0.0037 | −2.29985 | −2.04435 |
| 10914799 | baculoviral IAP repeat-containing 3 | Birc3 | NM_023987 | 0.000774 | 3.1982 | 2.21198 |
| 10791652 | caspase 3, apoptosis related cysteine protease | Casp3 | NM_012922 | 0.001718 | 2.62625 | 2.20514 |
| 10736712 | chemokine (C-C motif) ligand 12 | Ccl12 | NM_001105822 | 0.002288 | 4.38236 | 2.10232 |
| 10736697 | chemokine (C-C motif) ligand 2 | Ccl2 | NM_031530 | 0.00058 | 38.8349 | 17.0997 |
| 10745677 | chemokine (C-C motif) ligand 3 | Ccl3 | NM_013025 | 7.62E-05 | 19.8193 | 9.71154 |
| 10736863 | chemokine (C-C motif) ligand 4 | Ccl4 | NM_053858 | 0.001026 | 4.06268 | 3.00096 |
| 10736702 | chemokine (C-C motif) ligand 7 | Ccl7 | NM_001007612 | 0.000248 | 4.68541 | 2.67958 |
| 10729777 | cholesterol 25-hydroxylase | Ch25h | NM_001025415 | 5.47E-05 | 4.58918 | 3.28027 |
| 10764069 | chitinase 3-like 1 | Chi3l1 | NM_053560 | 0.010591 | 2.88704 | 2.22024 |
| 10912908 | cytokine inducible SH2-containing protein | Cish | NM_031804 | 0.003605 | 10.9118 | 7.35678 |
| 10712853 | cardiotrophin-like cytokine factor 1 | Clcf1 | NM_207615 | 0.009706 | 3.56151 | 2.0363 |
| 10814430 | ceruloplasmin | Cp | NM_012532 | 0.003256 | 2.38102 | 2.53086 |
| 10825869 | colony stimulating factor 1 (macrophage) | Csf1 | NM_023981 | 0.000858 | 2.30889 | 2.15895 |
| 10775900 | chemokine (C-X-C motif) ligand 1 (melanoma growth stimulat | Cxcl1 | NM_030845 | 0.012601 | 4.11514 | 3.36565 |
| 10771655 | chemokine (C-X-C motif) ligand 10 | Cxcl10 | NM_139089 | 0.003066 | 21.4607 | 7.85562 |
| 10784355 | emopamil binding protein-like | Ebpl | NM_001108381 | 0.001569 | −2.26226 | −2.09366 |
| 10873706 | Eph receptor A2 | Epha2 | NM_001108977 | 0.002851 | 2.39137 | 2.33589 |
| 10860231 | fibrinogen-like 2 | Fgl2 | NM_053455 | 0.000414 | 4.1065 | 3.1288 |
| 10713045 | fos-like antigen 1 | Fosl1 | NM_012953 | 0.000264 | 5.88589 | 4.16491 |
| 10819523 | guanylate binding protein 2 | Gbp2 | NM_133624 | 0.000294 | 14.8983 | 7.64439 |
| 10819489 | guanylate binding protein 5 | Gbp5 | NM_001108569 | 0.004085 | 7.65404 | 4.22902 |
| 10915843 | galactosidase, beta 1-like 2 | Glb1l2 | ENSRNOT00000037790 | 0.002801 | −3.04631 | −2.17671 |
| 10806122 | heme oxygenase (decycling) 1 | Hmox1 | NM_012580 | 0.008369 | 5.70686 | 2.9304 |
| 10908319 | intercellular adhesion molecule 1 | Icam1 | NM_012967 | 0.00315 | 5.74547 | 3.35268 |
| 10831077 | immediate early response 3 | Ier3 | NM_212505 | 0.005316 | 3.02458 | 2.20576 |
| 10845708 | interferon induced with helicase C domain 1 | Ifih1 | NM_001109199 | 0.001642 | 3.36324 | 2.75239 |
| 10936365 | interleukin 13 receptor, alpha 1 | Il13ra1 | NM_145789 | 0.004069 | 2.21356 | 2.08254 |
| 10789857 | interleukin 17 receptor B | Il17rb | NM_001107290 | 0.021732 | 2.29043 | 2.26483 |
| 10813007 | interleukin 6 signal transducer | Il6st | NM_001008725 | 0.018115 | 2.16052 | 2.03731 |
| 10806585 | jun B proto-oncogene | Junb | NM_021836 | 0.000634 | 4.24227 | 3.86837 |
| 10844331 | lipocalin 2 | Lcn2 | NM_130741 | 0.001852 | 11.4978 | 5.73872 |
| 10773853 | leukemia inhibitory factor (cholinergic differentiation fact | Lif | NM_022196 | 0.004038 | 6.05907 | 6.27293 |
| 10751793 | leucine rich repeat containing 15 | Lrrc15 | NM_145083 | 0.021229 | 3.28743 | 2.22908 |
| 10880293 | mitogen-activated protein kinase kinase kinase 6 | Map3k6 | NM_001107909 | 0.018572 | 3.52464 | 2.64741 |
| 10903013 | methionine-tRNA synthetase | Mars | NM_001127659 | 0.00072 | 2.00698 | 2.2033 |
| 10898561 | myo-inositol oxygenase | Miox | NM_145771 | 0.002983 | −2.24009 | −2.20493 |
| 10815806 | myeloid leukemia factor 1 | Mlf1 | NM_001107680 | 0.002256 | 2.96741 | 2.28383 |
| 10907881 | matrix metallopeptidase 3 | Mmp3 | NM_133523 | 0.0008 | 12.1207 | 5.47872 |
| 10809392 | metallothionein 1a | Mt1a | NM_138826 | 0.00235 | 3.86934 | 3.13553 |
| 10827989 | metallothionein 2A | Mt2A | NM_001137564 | 0.002073 | 9.97229 | 5.45083 |
| 10715787 | nuclear factor of kappa light polypeptide gene enhancer | Nfkb2 | NM_001008349 | 0.001701 | 3.01772 | 2.0803 |
| 10727717 | neuronal PAS domain protein 4 | Npas4 | NM_153626 | 0.002788 | 4.27359 | 2.5593 |
| 10821698 | oncostatin M receptor | Osmr | NM_001005384 | 0.000642 | 6.0085 | 4.12968 |
| 10881293 | podoplanin | Pdpn | NM_019358 | 0.001418 | 3.99897 | 2.61301 |
| 10930660 | protein S (alpha) | Pros1 | NM_031086 | 0.000526 | 2.09544 | 2.68498 |
| 10939498 | RNA binding motif protein 41 | Rbm41 | NM_001109420 | 0.003826 | 2.27706 | 2.07025 |
| 10874929 | retinol dehydrogenase 10 (all-trans) | Rdh10 | NM_181478 | 0.00379 | 2.9943 | 2.32697 |
| 10900511 | receptor accessory protein 6 | Reep6 | NM_001013218 | 8.44E-05 | −3.21858 | −2.57593 |
| 10883071 | similar to hypothetical protein MGC38716 | RGD1304963 | ENSRNOT00000011832 | 0.005265 | 2.07828 | 2.02776 |
| 10816879 | RGD1564171 | RGD1564171 | NM_001109186 | 0.003087 | 2.42088 | 2.40646 |
| 10906926 | Rho family GTPase 1 | Rnd1 | NM_001013222 | 0.020945 | 2.01484 | 2.03486 |
| 10889399 | radical S-adenosyl methionine domain containing 2 | Rsad2 | NM_138881 | 0.016232 | 12.7868 | 4.6819 |
| 10765173 | selectin, endothelial cell | Sele | NM_138879 | 0.003772 | 2.68122 | 2.22527 |
| 10910406 | sema domain, immunoglobulin domain (Ig), and GPI membr | Sema7a | NM_001108153 | 0.000297 | −2.20198 | −2.08698 |
| 10744687 | solute carrier family 13 (sodium-dependent citrate trans | Slc13a5 | NM_170668 | 0.00314 | 4.69584 | 3.06774 |
| 10805335 | solute carrier family 14 (urea transporter), member 1 | Slc14a1 | NM_019346 | 0.003031 | 2.6531 | 2.87021 |
| 10804672 | solute carrier family 26 (sulfate transporter), member 2 | Slc26a2 | NM_057127 | 0.015372 | 2.17668 | 2.02817 |
| 10823057 | solute carrier family 7 (cationic amino acid transpor | Slc7a11 | NM_001107673 | 0.000438 | 2.11226 | 2.16576 |
| 10935997 | SFRS protein kinase 3 | Srpk3 | NM_184045 | 0.002203 | 2.15515 | 2.54938 |
| 10927842 | signal transducer and activator of transcription 1 | Stat1 | NM_032612 | 0.000288 | 3.0351 | 2.42253 |
| 10794345 | sushi domain containing 3 | Susd3 | NM_001107341 | 8.31E-06 | −2.26654 | −2.62958 |
| 10821959 | threonyl-tRNA synthetase | Tars | NM_001006976 | 0.000161 | 2.33103 | 2.32162 |
| 10936482 | TIMP metallopeptidase inhibitor 1 | Timp1 | NM_053819 | 0.002114 | 6.19945 | 3.69766 |
| 10919694 | transmembrane protein 108 | Tmem108 | ENSRNOT00000014519 | 0.002274 | −2.05022 | −2.23734 |
| 10762108 | transmembrane protein 116 | Tmem116 | NM_001159625 | 0.000345 | −2.39288 | −2.23365 |
| 10874198 | tumor necrosis factor receptor superfamily, member 9 | Tnfrsf9 | NM_001025773 | 0.001067 | 4.29073 | 3.16758 |
| 10774171 | uridine phosphorylase 1 | Upp1 | NM_001030025 | 0.001233 | 3.84779 | 2.06033 |
| 10720215 | zinc finger protein 36 | Zfp36 | NM_133290 | 0.00113 | 4.38522 | 3.47823 |
| 10935061 | — | — | 0.000426 | 2.08993 | 2.27601 | |
| 10766724 | — | — | 0.001338 | 3.06184 | 3.89387 | |
| 10815496 | — | — | 0.003018 | 2.12199 | 2.05157 | |
| 10802706 | — | — | 0.004766 | 2.01494 | 2.94154 | |
| 10937867 | — | — | 0.006416 | 2.30821 | 2.21384 |