Table 1 of Brémond-Gignac, Mol Vis 2010; 16:1705-1711.
Set |
Forward primer |
Reverse primer |
Gene region |
Annealing temperature (°C) |
Product size (bp) |
---|---|---|---|---|---|
FOXE3 primers [3] | |||||
1 | tgtccatataaagcgggtcg | atgtacgagtagggcggctt | Exon 1 (N-terminus) | 56 | 298 |
2 | ttctctggcttccctgccct | tcggtgatgaagcggtagat | Exon 1 (N-terminus, forkhead domain) | 57 | 271 |
3 | aagccgccctactcgtacat | tcgttgagcgtgagattgtg | Exon 1 (Forkhead domain) | 56 | 170 |
4 | ttcatcaccgaacgctttgc | aggaagctgccgttgtcgaa | Exon 1 (Forkhead domain) | 56 | 185 |
5 | aagggcaactactggacgct | tagctccggctgcaggttca | Exon 1 (Forkhead domain, C-terminus) | 55 | 267 |
6 | tctgttcagcgtcgacagc | acaggtcgcacaggtgcct | Exon 1 (C-terminus) | 55 | 352 |
PAX6 primers [37] | |||||
1 | ctcatttcccgctctggttc | aagagtgtgggtgaggaagt | Exon 1 | 60 | 197 |
2 | ttatctctcactctccagcc | aagcgagaagaaagaagcgg | Exon 2 | 60 | 276 |
3 | tcagagagcccatcgacgtat | ctgtttgtgggttttgagcc | Exon 3 | 60 | 193 |
4 | ttgggagttcaggcctacct | gaagtcccagaaagaccaga | Exon 4 | 60 | 153 |
5 | cctcttcactctgctctctt | atgaagagagggcgttgaga | Exon 5 | 60 | 257 |
5a | tgaaagtatcatcatatttgtag | gggaagtggacagaaaacca | Exon 5a | 55 | 237 |
6 | gtggttttctgtccacttcc | aggagagagcattgggctta | Exon 6 | 60 | 299 |
7 | caggagacactaccatttgg | atgcacatatggagagctgc | Exon 7 | 60 | 252 |
8 | gggaatgttttggtgaggct | caaagggccctggctaaatt | Exon 8 | 60 | 371 |
9 | gtagttctggcacaatatgg | gtactctgtacaagcacctc | Exon 9 | 60 | 206 |
10 | gtagacacagtgctaacctg | cccggagcaaacaggtttaa | Exon 10 | 60 | 243 |
11 | ttaaacctgtttgctccggg | ttatgcaggccaccaccagc | Exon 11 | 60 | 208 |
12 | gctgtgtgatgtgttcctca | tgcagcctgcagaaacagtg | Exon 12 | 60 | 227 |
13 | catgtctgtttctcaaaggga | gaacaattaacttttgctggcc | Exon 13 | 55 | 957 |
PITX2 primers [24] | |||||
1a | ttggctcctaagtgcccc | ccagactcgcattatctcac | Exon 1a | 56 | 596 |
1b | cttgacacttctctgtcagg | aagcgggaatgtctgcagg | Exon 1b | 56 | 667 |
2 | tagtctcatctgagccctgc | cactggcgatttggttctga | Exon 2 | 56 | 282 |
3 | acgcctctctccgcacgt | ttcttgcgctttcgcccga | Exon 3 | 56 | 258 |
4 | cagctcttccacggcttct | ttctctcctggtctacttgg | Exon 4 | 56 | 374 |
5a | gtaatctgcactgtggcatc | ctgtgggtgcggctcaca | Exon 5 | 56 | 627 |
5b | ctgagactgaaagcaaagca | ctcccatgaaataaaacacattt | Exon 5 | 56 | 787 |
PITX3 primers [31] | |||||
1 | cctggtctgccataaagtga | attctcgacctgttcccaag | Exon 1 | 55 | 343 |
2 | acgcagccccagctttac | aagccagcgcatattctcc | Exon 2 | 55 | 395 |
3 | gtgcaggacataacagcttc | gagcagaggctggaggttg | Exon 3 | 55 | 528 |
4a | ctctagccacctcatctcg | aggcataagggcaggacac | Exon 5 | 55 | 524 |
4b | agacctttccattcgccttc | agtcaaaatgaccccagtcc | Exon 5 | 55 | 483 |