Table 2 of Goldstein, Mol Vis 2010; 16:1549-1569. Table 2 of Goldstein, Mol Vis 2010; 16:1549-1569.
Table 2. Primer pair sequences used to screen candidate genes within the minimal LD interval.
Primer pair |
Gene name |
Forward primer name |
Forward primer sequence |
Reverse primer name |
Reverse primer sequence |
|---|---|---|---|---|---|
| 1 | C8orf4 | C8orf4F1 | AATCAACCCTGATAAGCCACAGAA | C8orf4R1 | TAATGGGGTCCTTCAAATATCCAA |
| 2 | C8orf4 | C8orf4F2 | CAATCATCACAGACCAAGAGCAG | C8orf4R2 | GAAGAAGAGGACGAAAGACAAGC |
| 3 | C8orf4 | C8orf4F3 | GTGTTGGGTCTCACAAACTCCTTC | C8orf4R3 | ACATCCCTGCTCCATCCCTGA |
| 4 | IDO1 | IDO1F1 | AGTTTCTTTCCGACTTCCCCAAT | IDO1R1 | ACTCTGCCTCTAATTTTGGCACTG |
| 5 | IDO1 | IDO1F2 | TGTGAAAAAGAGACAGGTGAGAGTG | IDO1R2 | TAAAAATCAGGACGAGAGGATGGA |
| 6 | IDO1 | IDO1F3 | GGGTGATATGAACATTTTATGCCTCT | IDO1R3 | AGGCTGTGTGCTTAGGTTGTAAGG |
| 7 | IDO1 | IDO1F4 | GATGGACGCACAAATAAATGACTG | IDO1R4 | TACCCCTAAAGCAGAGAAGAAAGC |
| 8 | IDO1 | IDO1F5 | GCAGATAAACCACTGAAAAACTGAA | IDO1R5 | TGATTGCTCTACTTATGCAAATGG |
| 9 | IDO1 | IDO1F6 | TCAGCCTAAAAATGAAGTGGAAATC | IDO1R6 | CCAAGGACCCATCAGCAGTAAC |
| 10 | IDO1 | IDO1F7 | GGGGCTCTTGTTTCATTTTGTTTA | IDO1R7 | CTACCCTTCCTGTCCATACTCCAG |
| 11 | IDO1 | IDO1F8 | CAGGATGGTGGTAAACTCATTTCC | IDO1R8 | TACAAGGAAGGCACAGATATTGGA |
| 12 | IDO1 | IDO1F9 | TCCTTTCTTTTTCCCAAGTCATTTC | IDO1R9 | TTGTCATCAGCAGCCAGTTGTT |
| 13 | IDO1 | IDO1F10 | TGATTTTCTTTTTCTCTTCCAACTGA | IDO1R10 | CCAGCACTTTATCCTCTCACCTTT |
| 14 | IDO1 | IDO1F11 | GGAAGAAGAATAACGAAGCCGATT | IDO1R11 | CAGATGAAATGCTGATGGGAAGTT |
| 15 | TM2D2 | TM2D2F1 | GGACCTGATTGGAGGAAGCAC | TM2D2R1 | ATTGGTGAGAGCAGTGAGAAACCT |
| 16 | TM2D2 | TM2D2F2 | GACCAGAAACACTCCCAATGAAAG | TM2D2R2 | GCTCAAAGAACAAAAGACAGGTTG |
| 17 | TM2D2 | TM2D2F3 | TCCACATTGACCATTCCCAAA | TM2D2R3 | AAGGCTATTTTCACAGGATTTATGC |
| 18 | TM2D2 | TM2D2F4 | CACAGAGGAACTGCTACACCATCT | TM2D2R4 | CACAAAAGGCACAAGGCTAAAAAT |
| 19 | HTRA4 | HTRA4F1 | AGAAAACTGTGGTGGAGGTGTGTT | HTRA4R1 | GAGGAGGTAAAGGAGGCTGGATAG |
| 20 | HTRA4 | HTRA4F2 | CTCTACCCTTCCCACCCCTCCT | HTRA4R2 | GCACGATGAAAACAGAAAGCAT |
| 21 | HTRA4 | HTRA4F3 | CGTGGTCTGTTGAGGTTTTTAGA | HTRA4R3 | CGTGAAGGGGACAAGGACTATTTA |
| 22 | HTRA4 | HTRA4F4 | TGGCATAAATACACTGAAGGTGACA | HTRA4R4 | GCAGACCCTAAAAAGACAGCAAGT |
| 23 | HTRA4 | HTRA4_5F | TGTGTAGGCTCTGGAATAAATCTGA | HTRA4_5R | ACCTTACCTCTGCCCTTTCTCAT |
| 24 | HTRA4 | HTRA4_6F | CACTTGGTGGTTGGTAAACATTGA | HTRA4_6R | CAGGCGACAGCATTGAGAAAA |
| 25 | HTRA4 | HTRA4_7F | GGTTCAGTAGTTGAGCGATGGAAT | HTRA4_7R | AAGGTCAGCGTTAGGAAAACACAC |
| 26 | HTRA4 | HTRA4_8F | TGAGCTGAGTGCATGGAAACTGT | HTRA4_8R | GTCATCCTGCGCCCTTTCTTC |
| 27 | HTRA4 | HTRA4_9F | GTGGTGTGTGTGTGTATGGAGGTC | HTRA4_9R | AAGAAGGAGAGAAAACTGGGAACG |
| 28 | HTRA4 | HTRA4_10F | GAGCGGAGTTGGGGAGAGACC | HTRA4_10R | GACCTTCAGTTATGTCGTGGGAGT |
| 29 | HTRA4 | HTRA4_11F | GTGCTCTGGACCTCCCTGACTA | HTRA4_11R | TCCACATGCTTTAGATTCCCTGTT |
| 30 | HTRA4 | HTRA4_12F | AACTGTGACCAGCTTGATGGAATC | HTRA4_12R | GCACATCTCAATCCACATATTTACCA |
| 31 | HTRA4 | HTRA4_13F | ATGGTCTTTCTTTCCTCCCCTCTC | HTRA4_13R | CATCTTTGGCACATCTTCAATACAA |
| 32 | LETM2 | LETF1 | TTCTTCTTATTCCCCATCATTTGC | LETR1 | CCTCTTCACAATCGCCCTAAAGTA |
| 33 | LETM2 | LETF2 | CAAGGTGACAGTTCTTTTCCTCTCA | LETR2 | TGTCCAAGTCAGCCCAAGTCG |
| 34 | LETM2 | LETF3 | CCAGATGCCCCATGAAATACA | LETR3 | TCCTTCCTAGTGGGTCCTAACTGA |
| 35 | LETM2 | LETF4 | ACTGGGACACACAACAAACGGTA | LETR4 | GCAAAGTAGAAATCACAAAATGAGGTC |
| 36 | LETM2 | LETF5 | TTCTTTCCCCTTATCTGCTCTGTG | LETR5 | ATCTGTGGAGACACCCCCGTTAT |
| 37 | LETM2 | LETF6 | AGGGATTTAGTGAGTGAAAAGCAA | LETR6 | GTTTGGATGACAGGAAGAAGTGTG |
| 38 | LETM2 | LETF7 | CCAGAGCAGAAGGATGACACAAGT | LETR7 | TTTACACAGTTTGGTGGGATGACA |
| 39 | PPAPDC1B | PPF1 | GCCTTCCTCCGGTGCAGTTCC | PPR1 | GTCTCTGGAGCCAAAATGGACATC |
| 40 | PPAPDC1B | PPF2 | CTTTATTGCGGGGGTTGGTTTG | PPR2 | CAGGAGGGGAGCGGAGGAAGG |
| 41 | PPAPDC1B | PPF3 | GTCTAACCTTGCTCCTCTCGCTTG | PPR3 | CAAACTCCTTCCTCTGTCCTTGAA |
| 42 | PPAPDC1B | PPF4 | CGGATGAATGAGGGAGGTTCCTT | PPR4 | TCAGGATAATGGAAAAATTGGGACA |
| 43 | PPAPDC1B | PPF5 | TCCTACCAAGTATCAGAATGCCAGT | PPR5 | CACCAGAGAAAGTAAACAGAGCCAAA |
| 44 | DDHD2 | DDF1 | GGGTGAGGGAGAGGGAGAAATAGA | DDR1 | TCAAGAAAGAGAAGACCTGAGTTACAA |
| 45 | DDHD2 | DDF2 | GGGGAAGACGCAGGGATAACTT | FFR2 | CGGAGCGGATGGAAACACAGTAA |
| 46 | DDHD2 | DDF3 | GAGGGCAGGAGCGTGTGAAAG | DDR3 | ACAAACCCAGAATCCCAAGAAACA |
| 47 | DDHD2 | DDF4 | GTTGTGTGGCCCCCTTGAGATTAG | DDR4 | AGGCTTTTCTGAGCTTCTGCTTGA |
| 48 | DDHD2 | DDF5 | TCCTCAAGCAGAAGCTCAGAAAAG | DDR5 | TGAAAATACATGAAAAGGGATCAAGG |
| 49 | DDHD2 | DDF6 | AGCCTTTTATTTTTCTGGCTCTGA | DDR6 | AAATGGTGGCAGTGGATACAA |
| 50 | DDHD2 | DDF7 | CACTGGTACGTTATGTGGGCATATT | DDR7 | AATCCAAATCCATAGAAAAAGGTCA |
| 51 | DDHD2 | DDF8 | TGCAATCTTATTAACCTATTCATTGTGA | DDR8 | TTCTACGGATTAAGGGCTTGTTCA |
| 52 | DDHD2 | DDF9 | TCATTGCTTCCCTGGTGATACATA | DDR9 | TTCATCCATATCACTGATCAGAAAAC |
| 53 | DDHD2 | DDF10 | AAGCTTGAAGGCTAAGCTGAGTAA | DDR10 | TGCTTCTATCAGCCAAGAATGACA |
| 54 | DDHD2 | DDF11 | AAAAATGTTGCTTCAACTAAAATTGC | DDR11 | CTCTCCCACAAAGCAAAAATCACT |
| 55 | DDHD2 | DDF12 | GTAGTCTGGGAGGGAGAAGGAAGC | DDR12 | TCACAAAGCAAAAGGATACAAGGA |
| 56 | DDHD2 | DDF13 | TTGCTCTTCATCATACTCTGCTATTG | DDR13 | TGTTGCCCCATCACTTTCTGA |
| 57 | DDHD2 | DDF14 | GGATATTTTTATAACATAGCAGCTCCA | DDR14 | AGGTGAGAACACAGGAGCTATCCA |
| 58 | DDHD2 | DDF15 | TTCTTGGCCTAATACACAGTTCCT | DDR15 | AACAAAGTGAATGAGGTCCAGTCC |
| 59 | DDHD2 | DDF16 | CCCAGGACCCCAGGATTACAC | DDR16 | TTCTGCTTCTCTTGACATCTTTCC |
| 60 | DDHD2 | DDF17 | AGAGGAGGAAAGTGCAGAAAGGTT | DDR17 | ACCAGTGACCAAAGAACACCATTT |
| 61 | DDHD2 | DDF18 | CCTGTTCATTTGGTTTTTAGATTCC | DDR18 | GTGGCTTTTCTGGGGGAGGAT |
| 62 | DDHD2 | DDF19 | TCCCCTTTTCAATCTGTGATAGGA | FOR SEQUENCING REACTION 48 | |
| 63 | LSM1 | LSM1_F1 | GAGAGTCGTGGGACGGAGGTC | LSM1_R1 | GTCAACGCCGAACAGCCAGAA |
| 64 | LSM1 | LSM1_F2 | ATCCCTTGGTCCTTCCACTAAT | LSM1_R2 | TCTATCGTTTGGCTCCCTCTACTG |
| 65 | LSM1 | LSM1_F3 | ATTCTTGTAACTGGTCCCCACCAT | LSM1_R3 | GCTGGATGCAATGTGGAAAATATAC |
| 66 | LSM1 | LSM1_F4 | CGATCCCTACCACCACATTCATA | LSM1_R4 | TCAGGATGTCACTTTCATTCAGTG |
| 67 | LSM1 | LSM1_F5 | AAACCCCGTCTGTCTCTCCAAC | LSM1_R5 | GACCTCCGTCCCACGACTCTC |
| 68 | STAR | STAR1F | CTCTATCCTTGACCCCTTCCTCTG | STAR1R | GGTAGCCTCCGTGCCAATCTA |
| 69 | STAR | STARF2 | GTCACTGCTGCCCTCCTCTCT | STARR2 | CCCATCCCCTGTAGTCTGTGTATT |
| 70 | STAR | STARF3 | CAAATACACAGACTACAGGGGATGG | STARR3 | GACAGCAGAGGAACAGTGAGGAAC |
| 71 | STAR | STARF4 | GTGGCAGGAAAGATTAGCAACTGT | STARR4 | TGTTAGGGAAGAGAGGTTTTGAGG |
| 72 | STAR | STARF5 | ATGAGGCAAGGCTGAGGTTTAG | STARR5 | TTTTGAGGTGATGGAACAGTAGGC |
| 73 | STAR | STARF6 | GCCTACTGTTCCATCACCTCAAA | STARR6 | GCCCTCATTTTCTTGGTCCTAAA |
| 74 | STAR | STARF7 | ATGGAAACAATGGGAGAGTGGAAC | STARR7 | GCTGAAGGAAGAGACCAAGGAC |
| 75 | EIF4BP1 | EIF4F1 | GTTCTCACGGCAGGAACCGAAG | EIF4R1 | GATGCGCCTTATTGCAGTCAC |
| 76 | EIF4BP1 | EIF4F2 | CCTAAGAGTGTATGAGGAAGAGGAAGC | EIF4R2 | CACCAAAGGGGTCACAAAAGAC |
| 77 | EIF4BP1 | EIF4F3 | CACCACCAGCAAACACTGACA | EIF4R3 | CAAAACAAAACAACCCTCCATTTC |
| 78 | EIF4BP1 | EIF4F4 | TAAAAGGACAGGCAGGGTGGCATA | EIF4R4 | CAGGATAGGAAGATGAGTAACATTGC |
| 79 | EIF4BP1 | EIF4F5 | CTTTTGGGGTAAGGGGCAGAGT | EIF4R5 | CATACAGGGACAGGAAATGGAAAC |
| 80 | EIF4BP1 | EIF4F6 | GCAGGAGGTTTGAGATGGCTTT | EIF4R6 | GGGAAAATGCTTCAGGGACAAT |
| 81 | EIF4BP1 | EIF4F7 | ATGCCTCCTGTATTGGTCTGCTA | EIF4R7 | ATCCATCCATCCTTTTCTGTGTGT |
| 82 | EIF4BP1 | EIF4F8 | CCTACTCTCCCTCCATTCTCTTTG | EIF4R8 | GGTGGCTTTTATTTCCTCTCTTGG |
| 83 | BRF2 | BRFF1 | TAGACTGCAAAGAGGGGAAACAAC | BRFR1 | AGGTGCTAGAAAAACAGACGAACG |
| 84 | BRF2 | BRFF2 | GACGGAAGGGTTATGGGTCAAT | BRFR2 | GTGAAAACAGGAAAAGCAAGAGGA |
| 85 | BRF2 | BRFF3 | TCCAAAGAATGGTGGGTTGAAAT | BRFR3 | GGGCACAAGAGAGGGAGACTACAT |
| 86 | BRF2 | BRFF4 | TGTACTCCTTTTCCTTGCTTTGGA | BRFR4 | GTGTGAGTGCTCCCCTGGATG |
| 87 | BRF2 | BRFF5 | GCTGCTACCTTCCTGGCTTGG | BRFR5 | GATAGGGGGTGGGGGACAGAT |
| 88 | GPR124 | GPR124F1 | CTCTTGACCCCACCTGTCTGAA | GPR124R1 | GGAACTCACCTCCCATCTCTGG |
| 89 | GPR124 | GPR124F2 | CCTTTACCGAGAAGAAACCTCCAG | GPR124R2 | CTGACCCTGTCCTGCTTTGTG |
| 90 | GPR124 | GPR124F3 | CACTCTCCCCACCACTCTCCT | GPR124R3 | ATCCACTTTCCCCACCCTCAG |
| 91 | GPR124 | GPR124F4 | AGGGCTGAGGAGAATCCAGTTC | GPR124R4 | GAGAGTGGGAAGGCAATGGTG |
| 92 | GPR124 | GPR124F5 | GTATCTCTTCCCACCCAAGGAC | GPR124R5 | TGCCCACTACTCAATAACACAAGG |
| 93 | GPR124 | GPR124F6 | AAACCCACCTGTTCCTCTCTTGT | GPR124R6 | CGAGCCAGACCCTTTATGACTTAG |
| 94 | GPR124 | GPR124F7 | GAATGTACTTGTGTCCTTCGCTCA | GPR124R7 | CTTTCTCCATCTCCTGCTTTCTCC |
| 95 | GPR124 | GPR124F8 | CACGAAGTTAGAAAGAAGGTGGAG | GPR124R8 | CAGAACAGAGGGGCAGCAGAG |
| 96 | GPR124 | GPR124F9 | GCGTTAGAAGTGGTGTTAGAAGTGG | GPR124R9 | GCTGCCCAAAGACAGGAGTGT |
| 97 | GPR124 | GPR124F10 | AGGAGTGTGTAGGGGGACAAATCT | GPR124R10 | CGGAGTGTGTCTGTAACCTTTTTG |
| 98 | GPR124 | GPR124F11 | ACCACTCATTTGGCATTTGGAAT | GPR124R11 | GCCGCCTTTCTGTAGTTCTCG |
| 99 | GPR124 | GPR124F12 | CCAGATGGACTAGGGGCTAAAGTT | GPR124R12 | CAGTGGAGATGGGGCCTTTTA |
| 100 | GPR124 | GPR124F13 | GTGGGAGTAGGGGTGGTAAGAAGT | GPR124R13 | CAGGGCAGGCTCAGTAGGTTC |
| 101 | GPR124 | GPR124F14 | TAAATGGGAAAGAGGATGGGACAG | GPR124R14 | AGTAGCCAGAAGGGAACCTGAGTC |
| 102 | GPR124 | GPR124F15 | CACCCTTCATCCACTGCCTGT | GPR124R15 | CCCCTCGCACACCTGACTCTG |
| 103 | GPR124 | GPR124F16 | CCCTGCAAGCTCACCAACCTG | GPR124R16 | GTCGTCGTACTTGGCTCCCTTG |
| 104 | GPR124 | GPR124F17 | CTCAACGCAGCCAGTCTGAAC | GPR124R17 | GAGAGGTGGGGAGTACCTATGGAG |
| 105 | ERLIN2 | ERLF1 | GCATAAAGGGCAATCCCAAATAG | ERLR1 | GATGGCTTTCTTGGTCCTGAG |
| 106 | ERLIN2 | ERLF2 | GTTGTTGGCGTAGCCTTGTGTT | ERLR2 | GTGGGTACAAACTAGCGGAGCAG |
| 107 | ERLIN2 | ERLF3 | GAAACTTCTCATCTGTTAAGGATTGC | ERLR3 | TGTTGGTAAACACCCCAAACC |
| 108 | ERLIN2 | ERLF4 | CTGTGCTTGATGGTTTTCAGAGTG | ERLR4 | CAGAAGGCAGGGAACTTGGTG |
| 109 | ERLIN2 | ERLF5 | ATGAACTCTGCTGCTCCTTTGCT | ERLR5 | CTGCCTTCCAGTCCTCTGATTTG |
| 110 | ERLIN2 | ERLF6 | CTAGAAGTGGGACAGGGACCATAA | ERLR6 | AAAAGTGATTCTGACGATTTCTCAA |
| 111 | ERLIN2 | ERLF7 | GGTGCCTGCCTTCTCTTTAGC | ERLR7 | CAACACACTCGCTCCATCTGAC |
| 112 | ERLIN2 | ERLF8 | TTTATGGCTCATGCCAAAGAAGAT | ERLR8 | AATGGGGAGACTCAAAACTCACTG |
| 113 | ERLIN2 | ERLF9 | TGTGACTTAGGAGGGAGGTTAGGG | ERLR9 | ATCTGCTGGGCGAGTGAATGT |
| 114 | ERLIN2 | ERLF10 | TACTCACTACGGGGACTCTCAAGG | ERLR10 | CTACAACTGAATGCCACCAACAGA |
| 115 | ERLIN2 | ERLF11 | GGAGGGGAAGAGGAGTAAGCAT | ERLR11 | CTAAGGGAAGGGGCAATACCTGT |
| 116 | ERLIN2 | ERLF12 | GCAAACCCATTAGTACCCTGTCAC | ERLR12 | TGCTTACCTGAATAAGACCCCAAA |
| 117 | ERLIN2 | ERLF13 | CTGTTGCCCTTCTCTGTTCAAATA | ERLR13 | GGAAACTGCTGACTTCCATGATTT |