Table 3 of Ogando, Mol Vis 2010; 16:1004-1018. Table 3 of Ogando, Mol Vis 2010; 16:1004-1018.
Table 3. Chr6 QTL candidate genes with SNPs fitting haplotype B≠C and A≠C.
Gene |
ID |
Introns |
Non-syn |
Syn |
UTR |
PosMed |
Microarray FC 4m |
Microarray FC 8m |
qRT–PCR FC 4m |
qRT–PCR FC 8 m |
N criteria |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Fbln2 | Mm.249146 | 4 | Yes | 1.8 | 1 | 2 | |||||
| Ctnna2 | Mm.34637 | 5 | Yes | NP | NP | 1 | |||||
| Lrrtm4 | Mm.94135 | 27 | No | 1 | 1 | 0 | |||||
| Tacr1 | Mm.8055 | 13 | Yes | NP | NP | 1 | |||||
| Hk2 | Mm.255848 | 7 | Yes | 1 | 1 | 0.5* | 1 | 1 | |||
| Sema4f | Mm.270543 | 5 | Yes | NP | NP | 1 | |||||
| Dok1 | Mm.156 | 1 | Yes | 1 | 1 | 1.2* | 2.1* | 1 | |||
| Htra2 | Mm.21880 | 2 | Yes | 1 | 1 | 1 | 1.3 | 1 | |||
| Vax2 | Mm.307165 | 1 | Yes | NP | NP | 1 | |||||
| Cyp26b1 | Mm.255246 | 1 | 2 | Yes | NP | NP | 1 | ||||
| Rab11fip5 | Mm.220334 | 1 | No | 1 | 1 | 0 | |||||
| Alms1 | Mm.246967 | 1 | Yes | 1 | 1 | 1 | |||||
| Tgfa | Mm.137222 | 3 | Yes | 1.4 | 1.8 | 2 | |||||
| Gmcl1 | Mm.321452 | 4 | No | 1 | 1.3 | 1 | |||||
| Anxa4 | Mm.259702 | 32 | 1 | No | 1 | 1 | 0 | ||||
| Aak1 | Mm.221038 | 133 | 1 | 3 | Yes | 1 | 1 | 1 | |||
| Nfu1 | Mm.23809 | 11 | 1 | 1 | No | 1 | 0.8 | 1 | |||
| Gfpt1 | Mm.19893 | 59 | 1 | Yes | 0.5 | 0.5 | 2 | ||||
| Antxr1** | Mm.232525 | 432 | 1 | Yes | 1.4 | 1 | 1 | 1 | 2 | ||
| Gkn1 | Mm.46414 | 2 | No | 1 | 0.9 | 1 | |||||
| Arhgap25 | Mm.119564 | 85 | 1 | No | NP | NP | 0 | ||||
| Ccdc48 | Mm.333229 | 1 | 1 | 1 | NP | NP | 0 | ||||
| Cnbp | Mm.290251 | 1 | 1 | 1 | 0 | ||||||
| Isy1 | Mm.241546 | 20 | 1 | No | NP | NP | 0 | ||||
| Gata2 | Mm.476843 | 1 | 1 | 1 | 1 | ||||||
| Eefsec | Mm.333237 | 43 | Yes | 1 | 1 | 1 | 1 | 1 | |||
| Wnt7a | Mm.56964 | 1 | Yes | NP | NP | 1 | |||||
| Slc6a6 | Mm.395650 | 1 | Yes | 0.8 | 1 | 2 | |||||
| Grip2 | Mm.333264 | 1 | No | NP | NP | 0 |