Table 1 of Abouzeid, Mol Vis 2009; 15:771-777.
Table 1. Primers and PCR conditions.
Region |
Primer |
Sequence 5′-3′ |
Amplicon [bp] |
Annealing [°C] |
---|---|---|---|---|
promoter | PromF | CTGGACCCACGCCAGGTTTC | 340 | 61 |
PromR | GTTTTGGGCGGCATGACGCCTT | |||
RB exon 1 | 1F | CCGGTTTTTCTCAGGGGACGTTG | 340 | 56.4 |
1R | TTGGCCCCGCCCTACGCACAC | |||
RB exon 2 | 2F | CTATTGAAACAAGTATGTACTG | 331 | 54.3 |
2R | GGGTAATGGAATTATTATTAGC | |||
RB exon 3 | 3F | CAGTTTTAACATAGTATCCAG | 281 | 52.8 |
3R | AGCATTTCTCACTAATTCAC | |||
RB exon 4 | 4F | GTAGTGATTTGATGTAGAGC | 305 | 55 |
4R | CCCAGAATCTAATTGTGAAC | |||
RB exon 5 | 5F | GCATGAGAAAACTACTATGAC | 194 | 54.3 |
5R | CTAACCCTAACTATCAAGATG | |||
RB exon 6 | 6F | CACCCAAAAGATATATCTGG | 222 | 54.3 |
6R | ATTTAGTCCAAAGGAATGCC | |||
RB exon 7 | 7F | CCTGCGATTTTCTCTCATAC | 256 | 55 |
7R | ATGTTTGGTACCCACTAGAC | |||
RB exon 8 | 8F | AGTAGTAGAATGTTACCAAG | 380 | 50.8 |
8R | TACTGCAAAAGAGTTAGCAC | |||
RB exon 9 | 9F | TGCATTGTTCAAGAGTCAAG | 222 | 56 |
9R | AGTTAGACAATTATCCTCCC | |||
RB exon 10 | 10F | TCTTTAATGAAATCTGTGCC | 291 | 56 |
10R | GATATCTAAAGGTCACTAAG | |||
RB exon 11 | 11F | GAGACAACAGAAGCATTATAC | 245 | 54.2 |
11R | CGTGAACAAATCTGAAACAC | |||
RB exon 12 | 12F | GGCAGTGTATTTGAAGATAC | 310 | 52.5 |
12R | AACTACATGTTAGATAGGAG | |||
RB exon 13 | 13F | CTTATGTTCAGTAGTTGTGG | 342 | 54.3 |
13R | TATACGAACTGGAAAGATGC | |||
RB exon 14 | 14F | GTGATTTTCTAAAATAGCAGG | 212 | 58.9 |
14R | TGCCTTGACCTCCTGATCTG | |||
RB exon 15+16 | 15/16F | CAATGCTGACACAAATAAGG | 366 | 55 |
15/16R | AGCATTCCTTCTCCTTAACC | |||
RB exon 17 | 17F | AAAAATACCTAGCTCAAGGG | 339 | 56 |
17R | TGTTAAGAAACACCTCTCAC | |||
RB exon 18 | 18F | TGTACCTGGGAAAATTATGC | 340 | 56.4 |
18R | CTTTATTTGGGTCATGTACC | |||
RB exon 19 | 19F | ATAATCTGTGATTCTTAGCC | 273 | 56 |
19R | AAGAAACATGATTTGAACCC | |||
RB exon 20 | 20F | AAAGAGTGGTAGAAAAGAGG | 335 | 56.4 |
20R | CAGTTAACAAGTAAGTAGGG | |||
RB exon 21 | 21F | AAACCTTTCTTTTTTGAGGC | 328 | 54 |
21R | TACATAATAAGGTCAGACAG | |||
RB exon 22 | 22F | TAATATGTGCTTCTTACCAGTC | 313 | 56 |
22R | TTTAATGTTTTGGTGGACCC | |||
RB exon 23 | 23F | ATCTAATGTAATGGGTCCAC | 287 | 54.2 |
23R | CTTGGATCAAAATAATCCCC | |||
RB exon 24 | 24F | GAATATAGTTTGTCAGTGGTTC | 273 | 52 53 |
24R | GTGTTTGAATAACTGCATTTGG | |||
RB exon 25 | 25F | GGTTGCTAACTATGAAACAC | 297 | 54.2 55 |
25R | AGAAATTGGTATAAGCCAGG | |||
RB exon 26 | 26F | AGTAAGTCATCGAAAGCATC | 209 | 52.8 |
26R | AACGAAAAGACTTCTTGCAG | |||
RB exon 27 | 27F | CGCCATCAGTTTGACATGAG | 237 | 54.2 |