Table 1 of Steinbrugger, Mol Vis 2009; 15:609-618. Table 1 of Steinbrugger, Mol Vis 2009; 15:609-618.
Table 1. Sequences of primers and probes for TaqMan genotyping assays.
| Polymorphism | Primer/probe | Sequence |
|---|---|---|
| IL1B -511C>T (rs16944) | forward primer | GAGGCTCCTGCAATTGACAGA |
| reverse primer | TCTCTACCTTGGGTGCTGTTCT | |
| C probe | VIC-CTGCCTCGGGAGCT-NFQ | |
| T probe | FAM-CTGCCTCAGGAGCT-NFQ | |
| IL1RN 1018T>C (rs4251961) | forward primer | CCGGTGAGCCCTAAGTCTAAGATAG |
| reverse primer | GCCCTTCAGACCTCATTTTGACA | |
| T probe | VIC-AAAATGGACCTGATGCTAT-NFQ | |
| C probe | FAM-AATGGACCTGGTGCTAT-NFQ | |
| IL4 -584C>T (rs2243350) | forward primer | GACCTGTCCTTCTCAAAACACCTAA |
| reverse primer | GGCAGAATAACAGGCAGACTCT | |
| C probe | VIC-CATTGTCCCCCAGTGCT-NFQ | |
| T probe | FAM-CATTGTTCCCCAGTGCT-NFQ | |
| IL6 -174G>C (rs1800795) | forward primer | GACGACCTAAGCTGCACTTTTC |
| reverse primer | GGGCTGATTGGAAACCTTATTAAGATTG | |
| G probe | VIC-CCTTTAGCATCGCAAGAC-NFQ | |
| C probe | FAM-CTTTAGCATGGCAAGAC-NFQ | |
| IL10 -592C>A (rs1800872) | forward primer | GGTAAAGGAGCCTGGAACACATC |
| reverse primer | GCCCTTCCATTTTACTTTCCAGAGA | |
| C probe | VIC-CCCGCCTGTCCTGTAG-NFQ | |
| A probe | FAM-CCGCCTGTACTGTAG-NFQ | |
| IL18 +183A>G (rs5744292) | forward primer | AGCTGAGTGTAGTGACGCATG |
| reverse primer | CTCCTGCCTCAGCCTCTTG | |
| A probe | VIC-CCTCAATCCCAGCTACT-NFQ | |
| G probe | FAM-CTCAATCCCGGCTACT-NFQ | |
| TNF -308G>A (rs1800629) | forward primer | CCAAAAGAAATGGAGGCAATAGGTT |
| reverse primer | GGACCCTGGAGGCTGAAC | |
| G probe | VIC-CCCGTCCCCATGCC-NFQ | |
| A probe | FAM-CCCGTCCTCATGCC-NFQ | |
| CCL2 -2518A>G (rs1024611) | forward primer | GGAGGGCATCTTTTCTTGACAGA |
| reverse primer | GGAAGGTGAAGGGTATGAATCAGAA | |
| A probe | VIC-CAGACAGCTATCACTTT-NFQ | |
| G probe | FAM-AGACAGCTGTCACTTT-NFQ | |
| IL8 -251A>T (rs4073) | Assay-on-demand (C__11748116_10) | Predesigned assay from Applied Biosystems; primer and probe sequences not available. |
| CCL5 -403G>A (rs2107538) | forward primer | ACTGAGTCTTCAAAGTTCCTGCTT |
| reverse primer | GAGGACCCTCCTCAATAAAACACTTTATAAAT | |
| G probe | VIC-CATTACAGATCTTACCTCCTTT-NFQ | |
| A probe | FAM-CATTACAGATCTTATCTCCTTT-NFQ |