Table 3 of Kozulin, Mol Vis 2009; 15:45-59.
RNA integrity | Microarray quality controls | ||||||
---|---|---|---|---|---|---|---|
Tissue (specimen) | RIN# | 260/280 | Average background | Noise (Raw Q) | GAPDH 3′/5′ ratio | % present calls | |
Macula (1) | 8.9 | 2.03 | 89.8 | 3.6 | 1.09 | 51.4 | |
Nasal (1) | 9 | 2.03 | 89.3 | 3.55 | 1.15 | 50.8 | |
Surround (1) | 9.3 | 2 | 88.4 | 3.54 | 1.1 | 51.5 | |
Macula (2) | 9.5 | 2.04 | 90.8 | 3.6 | 1.09 | 50.1 | |
Nasal (2) | 9.9 | 1.96 | 82.8 | 3.32 | 1.12 | 50.9 | |
Surround (2) | 9.2 | 2.08 | 91.8 | 3.62 | 1.14 | 50.6 | |
Macula (3) | 9.1 | 1.97 | 80 | 3.05 | 1.21 | 51.9 | |
Nasal (3) | 9 | 1.97 | 73.4 | 2.83 | 1.16 | 55.5 | |
Surround (3) | 8.7 | 2.02 | 59.7 | 2.43 | 1.05 | 54.2 | |
Macula (4) | 9 | 1.85 | 53.9 | 2.19 | 1.13 | 54.6 | |
Nasal (4) | 9.3 | 1.97 | 57.5 | 2.37 | 1.14 | 54.9 | |
Surround (4) | 8.8 | 2.06 | 64.9 | 2.59 | 1.15 | 55.7 |