Table 2 of Nakamura, Mol Vis 2009; 15:2905-2910.


Table 2. Haplotype frequencies of tag SNPs of TLR2 among NTG patients and controls.


Haplotype
Frequency, %
p

Pc
Cases (n=200) Controls (n=128)
Block 1 (tag SNPs rs1898830, rs11938228)  
AC 51.8 52.3 0.88  
GA 46.8 46.5 0.95  
GC 1.5 1.2 0.72  
Block 2 (tag SNPs rs3804099, rs3804100, and rs7656411)
TTT 44.3 41.7 0.50  
CCG 29.4 24.1 0.14  
TTG 24.4 30.6 0.081  
CTG 1.0 3.1 0.047 0.19
Block 1+2 (tag SNPs rs1898830, rs11938228, rs3804099, rs3804100, and rs7656411)
GATTG 22.9 29.0 0.081  
ACCCG 26.6 21.2 0.12  
ACTTT 22.2 26.0 0.25  
GATTT 22.1 15.7 0.043 0.34
ACCTG 1.0 3.1 0.044 0.35
GACCG 1.7 1.8 0.93  
ACTTG 1.0 1.4
 
GCCCG 1.0 1.2 0.83