Table 4 of Frio, Mol Vis 2009; 15:2627-2633. Table 4 of Frio, Mol Vis 2009; 15:2627-2633.
Table 4. Variants detected in patient V-4/PMK146 as a function of base coverage.
SNP |
Reference base |
Calls in patient V-4/PMK146 (absolute coverage of the base) | |||||
|---|---|---|---|---|---|---|---|
| 4,000,000 sequences |
500,000 sequences |
50,000 sequences |
25,000 sequences |
10,000 sequences |
5,000 sequences |
||
| rs10469944 | C | G (3,901) | G (332) | G (34) | G (22) | G (7) | G (2) |
| rs10469945 | T | C (3,602) | C (375) | C (35) | C (22) | C (6) | C (4) |
| rs6546018 | G | T (3,445) | T (315) | T (30) | T (18) | T (8) | T (5) |
| rs6546019 | A | G (3,403) | G (316) | G (24) | G (13) | G (5) | G (4) |
| rs1446569 | C | G (3,407) | G (327) | G (36) | G (9) | G (5) | G (2) |
| rs4671519 | C | T (4,079) | T (375) | T (35) | T (15) | T (6) | T (4) |
| rs2305157 | T | C (2,671) | C (267) | C (28) | C (11) | No Call | No Call |
| rs10865340 | C | G (2,227) | G (221) | G (27) | G (11) | G (3) | G (2) |
| rs10865341 | A | T (2,228) | T (221) | T (27) | T (11) | T (3) | T (2) |
| rs11125979 | T | G (1,899) | G (172) | G (10) | G (9) | G (2) | No Call |
| rs4671069 | C | A (3,053) | A (275) | A (27) | A (14) | A (7) | No Call |
| rs1255 | T | C (2,588) | C (249) | C (25) | C (15) | C (5) | No Call |
| rs7606045 | T | G (2,390) | G (227) | G (19) | G (13) | G (8) | G (2) |
| rs964880 | C | A (5,158) | A (480) | A (52) | A (24) | A (12) | A (7) |
| rs2121351 | G | A (6,998) | A (684) | A (51) | A (29) | A (14) | A (7) |
| rs262470 | C | T (6,461) | T (620) | T (60) | T (29) | T (13) | T (5) |
| rs262471 | G | A (6,379) | A (545) | A (56) | A (31) | A (13) | A (6) |
| rs2604613 | G | A (5,445) | A (514) | A (69) | A (32) | A (9) | A (4) |
| rs262472 | G | A (7,326) | A (732) | A (70) | A (35) | A (12) | A (6) |
| rs262473 | G | T (3,401) | T (308) | T (33) | T (13) | T (7) | T (3) |
| rs262474 | A | G (7,445) | G (635) | G (51) | G (35) | G (20) | G (5) |
| rs262489 | G | A (6,908) | A (528) | A (47) | A (33) | A (9) | A (6) |
| rs262490 | A | G (4,928) | G (469) | G (39) | G (16) | G (9) | G (2) |
| W.S. Avg. Cov. | 7,053 | 659 | 64.5 | 32.4 | 12.8 | 6.3 | |
| SNP Avg. Cov. | 4,319 | 399 | 38.5 | 20 | 8.3 | 4.1 | |