Table 4 of Chen, Mol Vis 2009; 15:2349-2357.


Table 4. Haplotype Association analysis between the LOXL1 SNPs and XFS/XFG


Haplotype
Proportion x2
p value

OR (95%CI)
Case Control
rs1048661 rs3825942
T G   0.89 0.516 22.09 <1.00×10-3 6.77 (2.69 - 17.03)
G G   0.11 0.38 11.67 0.001 0.22 (0.09 - 0.55)
G A   0 0.104 4.21 0.04 NA *
Total     NA NA 20.36 <1.00×10-3 NA
rs1048661 rs2165241
T C   0.88 0.516 20.47 <1.00×10-3 6.99 (2.78 - 17.58)
G T   0.01 0.1 8.12 0.004 0.08 (0.01 - 0.62 )
T T   0.01 0 2.52 0.112 NA *
G C   0.1 0.384 13.64 <1.00×10-3 0.18 (0.07 - 0.48)
Total     NA NA 19.70 <1.00×10-3 NA
rs3825942 rs2165241  




G C   0.98 0.8 9.15 0.002 12.18 (1.61 - 92.09)
G T   0.02 0.1 1.95 0.163 NA *
A C   0 0.1 9.159 0.002 0.001(0 - inf)
Total     NA NA 13.45 0.001 NA
rs1048661 rs3825942 rs2165241
T G C 0.88 0.516 19.70 <1.00×10-3 6.77 (2.69 - 17.03)
G G C 0.1 0.29 7.04 0.008 0.28 (0.10 - 0.75)
G G T 0.01 0.09 2.59 0.108 NA
T G T 0.01 0 2.51 0.113 NA *
G A C 0 0.094 3.76 0.052 NA *
G A T 0 0.01 0.40 0.526 NA *
Total     NA NA 20.37 <1.00×10-3 NA