Table 1 of Kaur, Mol Vis 2009; 15:1366-1373.
Amplicon |
Reaction conditions |
Annealing temperature |
Forward primer sequence |
Reverse primer sequence |
Fragment length (bp) |
Genomic position |
Region |
---|---|---|---|---|---|---|---|
FOXC1i | FailSafe – G | 56.5 | CGGTTCTCACCTCCCATTG | TTGACGAAGCACTCGTTGAG | 1045 | chr6: 1555048–1556092 | Exonic |
FOXC1ii | FailSafe – K | 60 | AGTTCATCATGGACCGCTTC | ACGTACCGTTCTCGGTCTTG | 381 | chr6: 1555996–1556376 | Exonic |
FOXC1iii | FailSafe – J | 61 | GCATCCAGGACATCAAGACC | CAAGTGGCCCAGGTCTCC | 791 | chr6: 1556344–1557134 | Exonic |
FOXC1iv | Qiagen | 60 | CTCACCTCGTGGTACCTGAAC | AGAGTTTTCTTCGTGCTGGTG | 441 | chr6: 1557087–1557527 | Exonic/ 3′-UTR |
FOXC1v | Qiagen | 60 | TCCCTCCAAAAATTCAGCTC | ACGTCAGGTTTTGGGAACAC | 434 | chr6: 1557482–1557915 | 3′-UTR |
FOXC1vi | Qiagen | 60 | TGGATGTCGTGGACCAAAC | CTAGCCTCAAAGCAAGCTGAC | 414 | chr6: 1557869–1558282 | 3′-UTR |
FOXC1vii | Qiagen | 59 | TTTATTTTCCTGCAGCATCTTC | GATTAAATATCCCTTTCCAACC | 462 | chr6: 1558222–1558680 | 3′UTR |
FOXC1viii | Qiagen | 59 | TCCCCCATTTACAATCCTTC | AATCACAGGCCACGTAGAGC | 557 | chr6: 1558597–1559153 | 3′UTR |