Appendix 2 of Tröße, Mol Vis 2009; 15:1332-1350.


Appendix 2. Functional enrichment analysis.

To access the data, click or select the words “Appendix 2.” This will initiate the download of a Microsoft Excel worksheet (xls) file. Functional annotations for the transcripts in the data set were assigned using the Blast2GO software. We compared transcripts with q-values less than 5% in the SAM top list to the complete SAM list to find functional categories overrepresented among the significantly differentially expressed transcripts. Listed are functional categories enriched with a false discovery rate (FDR) of 0.5 or below. In the table headings, “Test” stands for the tested SAM top list with q-values of less than 5%, and “Ref” stands for the remaining transcripts in the SAM list. FWER: family wise error rate.