Table 2 of Shimauchi-Matsukawa, Mol Vis 2008; 14:358-369.
GI | Identification [gene symbol] | Sp | Length (bases) | Lowest Expected value | Start - End (position of a base) | Signal Intensity | Frq | ISH |
---|---|---|---|---|---|---|---|---|
Known as rod specific genes | ||||||||
27542822 | Cyclic nucleotide gated channel [gfCNG3] | Ca | 2654 | 0.E+00 | 1658 - 2397 | 29.4 | 44 | r1 |
34785175 | Guanine nucleotide binding protein (G protein), beta 1 subunit [gnb1] | Dr | 3230 | 1.E-36 | 2155 - 2255 | 5.2 | 8 | |
765276 | Rhodopsin [rhodopsin] | Cc | 1584 | 0.E+00 | 579 - 1181 | 5.9 | 2 | |
12862624 | G protein-coupled receptor kinase 1A-1a [GRK1A-1a] | Cc | 3777 | 1.E-98 | 2036 - 2289 | 11.2 | 2 | |
83955365 | G protein-coupled receptor kinase 1A-1b [GRK1A-1b] | Cc | 3565 | 1.E-98 | 2667 - 3040 | 16.9 | 1 | |
37748508 | Guanine nucleotide binding protein (G protein), gamma 1 subunit [gngt1] | Dr | 704 | 9.E-39 | 166 - 310 | 29.6 | 1 | |
Other genes | ||||||||
68356047 | Similar to aspartate beta-hydroxylase isoform b [asph] | Dr | 3592 | 1.E-17 | 3106 - 3179 | 19.8 | 5 | r2 |
29436543 | zgc:56703/ DnaJ (Hsp40) homolog, subfamily C, member 5 [zgc:56703] | Dr | 2556 | 3.E-18 | 1684 - 1845 | 5.7 | 4 | r3 |
56967377 | O-GlcNAc transferase [OGT] | Dr | 3111 | 0.E+00 | 778 - 1376 | 3.5 | 1 | r4 |
89886286 | Facilitated glucose transporter 1 [slc2a1] | Dr | 1696 | 4.E-102 | 1167 - 1521 | 4.0 | 1 | r5 |
68356301 | Hypothetical protein LOC554424/ Polo-like kinase 3 [LOC554424] | Dr | 3289 | 5.E-74 | 294 - 513 | 28.4 | 1 | |
42794004 | ADP-ribosylation factor 2 [arf2] | Dr | 2660 | 6.E-15 | 1878 - 1970 | 6.6 | 1 | |
50368934 | l-isoaspartyl protein carboxyl methyltransferase [pcmt] | Dr | 2740 | 1.E-17 | 2625 - 2723 | 15.8 | 1 | |
28278430 | Profilin 2 like [pfn21] | Dr | 2020 | 2.E-53 | 1309 - 1497 | 3.3 | 1 | |
41055366 | zgc:56668/ Signal recognition particle 9 kDa protein [srp9] | Dr | 757 | 2.E-78 | 96 - 422 | 13.0 | 1 | |
68392381 | Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 [nfbbil1] | Dr | 7291 | 1.E-47 | 7101 - 7223 | 1.9 | 1 | |
18147599 | Carbonic anhydrase 2 [Car2] | Th | 1976 | 1.E-25 | 1259 - 1452 | 10.4 | 1 | |
Hit with genomic sequence | ||||||||
62868299 | Zebrafish DNA sequence from clone DKEY-31K5 in linkage group 8 | Dr | 87522 | 3.E-34 | 78867- 78956 | 11.9 | 2 | |
40353178 | Zebrafish DNA sequence from clone CH211-235E18 in linkage group 2 | Dr | 196642 | 2.E-60 | 177487 - 177740 | 2.0 | 1 | |
54606605 | Zebrafish DNA sequence from clone CH211-194G1 in linkage group 5 | Dr | 197143 | 5.E-102 | 100810 - 101064 | 7.0 | 1 | |
54606605 | Zebrafish DNA sequence from clone CH211-194G1 in linkage group 5 | Dr | 197143 | 1.E-63 | 99403 - 99645 | 10.4 | 1 | |
73853724 | Zebrafish DNA sequence from clone CH211-103A8 in linkage group 3 | Dr | 165773 | 4.E-11 | 91117 - 91175 | 3.0 | 1 | |
40994808 | Zebrafish DNA sequence from clone CH211-206I14 in linkage group 7 | Dr | 173867 | 9.E-40 | 112044 - 112153 | 1.7 | 1 | |
50724681 | Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14 | Dr | 262038 | 8.E-21 | 228195 - 228365 | 4.6 | 1 | |
55818874 | Zebrafish DNA sequence from clone DKEY-158P11 in linkage group 4 | Dr | 92140 | 3.E-12 | 15398 - 15466 | 24.5 | 1 | |
42517023 | Zebrafish DNA sequence from clone DKEY-208P1 in linkage group 17 | Dr | 188037 | 4.E-94 | 92142 - 92399 | 12.1 | 1 | |
51127565 | Zebrafish DNA sequence from clone DKEY-95O3 in linkage group 15 | Dr | 155540 | 2.E-13 | 73341 - 73448 | 4.5 | 1 |