Table 2 of Ding, Mol Vis 2008; 14:2031-2041. Table 2 of Ding, Mol Vis 2008; 14:2031-2041.
Table 2. The top 50 preferentially overexpressed transcripts in the limbus that were selected according to the ranking of the average ratio of expression level.
| Gene title | Gene symbol | Public ID | Average ratio |
|---|---|---|---|
| Cell adhesion | |||
| myosin binding protein C, slow type | MYBPC1 | BF593509 | 23.4 |
| Collagen, type VIII, alpha 1 | COL8A1 | AL359062 | 5.04 |
| desmoglein 3 (pemphigus vulgaris antigen) | DSG3 | AI813438 | 4.85 |
| cadherin 6, type 2, K-cadherin (fetal kidney) | CDH6 | AU151483 | 4.06 |
| Protocadherin 9 | PCDH9 | R49295 | 3.62 |
| tenascin C (hexabrachion) | TNC | NM_002160 | 6.55 |
| Developmental process | |||
| keratin 13 | KRT13 | NM_002274 | 11.04 |
| tumor necrosis factor receptor superfamily, member 19 | TNFRSF19 | BF432648 | 7.72 |
| secretogranin II (chromogranin C) | SCG2 | NM_003469 | 6.02 |
| WNT inhibitory factor 1 | WIF1 | NM_007191 | 5.61 |
| v-jun sarcoma virus 17 oncogene homolog (avian) | JUN | NM_002228 | 3.9 |
| mohawk homeobox | MKX | AW023227 | 3.67 |
| Neurological and nervous system development | |||
| coagulation factor C homolog, cochlin (Limulus polyphemus) | COCH | BC007230 | 6.43 |
| retinol binding protein 4, plasma | RBP4 | NM_006744 | 6.15 |
| proenkephalin | PENK | NM_006211 | 5.39 |
| proteolipid protein 1 (Pelizaeus-Merzbacher disease, spastic paraplegia 2, uncomplicated) | PLP1 | BC002665 | 5.12 |
| paired box gene 3 (Waardenburg syndrome 1) | PAX3 | AA194168 | 4.31 |
| very low density lipoprotein receptor | VLDLR | L22431 | 8.75 |
| Netrin G1 | NTNG1 | AW051597 | 7.22 |
| pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1) | PTN | AL565812 | 3.44 |
| sodium channel, voltage-gated, type II, beta | SCN2B | AA447729 | 3.41 |
| Melanin metabolic process | |||
| tyrosinase-related protein 1 | TYRP1 | NM_000550 | 19.16 |
| tyrosinase (oculocutaneous albinism IA) | TYR | BC027179 | 5.58 |
| dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2) | DCT | NM_001922 | 4.27 |
| Transport | |||
| six transmembrane epithelial antigen of the prostate 1 | STEAP1 | NM_012449 | 8.08 |
| solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 | SLC7A2 | AA876372 | 6.44 |
| solute carrier family 35, member F3 | SLC35F3 | BF968270 | 4.88 |
| solute carrier family 16 (monocarboxylic acid transporters), member 6 | SLC16A6 | AI873273 | 4.79 |
| potassium voltage-gated channel, shaker-related subfamily, member 2 | KCNA2 | BF513715 | 3.54 |
| solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 | SLC28A3 | NM_022127 | 3.52 |
| Others | |||
| unknown | unknown | H99792 | 10.3 |
| phosphoenolpyruvate carboxykinase 1 (soluble) | PCK1 | NM_002591 | 9.6 |
| Transcribed locus, moderately similar to NP_775622.1 transmembrane protein 28 | unknown | H09780 | 8.98 |
| hydroxyprostaglandin dehydrogenase 15-(NAD) | HPGD | NM_000860 | 6.61 |
| glutathione peroxidase 2 (gastrointestinal) | GPX2 | NM_002083 | 6.6 |
| melan-A | MLANA | U06654 | 5.94 |
| roundabout, axon guidance receptor, homolog 2 (Drosophila) | ROBO2 | AB046788 | 5.33 |
| CAZ-associated structural protein | CAST1 | Z38645 | 5.23 |
| lipoma HMGIC fusion partner-like 3 | LHFPL3 | AI939602 | 5.06 |
| Chromosome 8 open reading frame 42 | C8orf42 | AI632224 | 4.97 |
| brain-specific angiogenesis inhibitor 3 | BAI3 | NM_001704 | 4.87 |
| adenylate cyclase 1 (brain) | ADCY1 | AL120173 | 4.65 |
| hypothetical protein LOC283713 | LOC283713 | T03743 | 4.52 |
| sushi domain containing 4 | SUSD4 | BC004888 | 3.77 |
| L-threonine dehydrogenase | TDH | NM_152566 | 3.76 |
| zinc finger protein 236 | ZNF236 | AA004757 | 3.68 |
| family with sequence similarity 107, member B | FAM107B | BC004872 | 3.55 |
| chromosome 1 open reading frame 74 | C1orf74 | AW295407 | 3.53 |
| low density lipoprotein receptor-related protein 11 | LRP11 | BF696304 | 3.51 |
| EPS8-like 1 | EPS8L1 | AF282167 | 3.51 |