Table 7 of Fink, Mol Vis 2008; 14:1737-1751.

Table 7. Haplotype association.

SNP
Haplotype		 Frequency
total (%)		 Standard
error		 Frequency (%)
χ2
p
1 2 3 4 5 controls cases
A G C C T A-G-C-C-T 28.02 0.0325 21.63 33.94 3.6 0.0575
A G C C G A-G-C-C-G 23.2 0.0305 9.39 31.68 14.01 0.0002
G G C C G G-G-C-C-G 10.87 0.0187 14.26 11.16 1.12 0.2889
A G A T T A-G-A-T-T 10.03 0.0176 17.08 6.17 6.79 0.0092
G G C C T G-G-C-C-T 9.79 0.0139 16.95 6.96 6.35 0.0117
A A C C T A-A-C-C-T 7.73 0.0112 9.93 5.36 1.41 0.2351
G G A T T G-G-A-T-T 3.23 0.0109 2.05 2.34 0.67 0.4132
G A C C T G-A-C-C-T 3.09 0.0106 2.55 2.38 0.26 0.6126

Frequencies of the haplotypes with a frequency of at least 1% in the total sample of 96 German Brown cattle and their standard errors, haplotype frequencies of cases and controls, and their association with BCSE on bovine chromosome 18 are shown. In the "SNP" column, SNP 1=AM930539; g.569A>G within CPT1C; SNP 2=AM930544; g.71G>A within SYT5; SNP 3=AM930553; c.703C>A within exon 5 of RDH13; SNP 4=AM930547; g.194C>T within intron 5 of RDH13; and SNP 5=AM930543; g.103T>G within NALP7.

Fink, Mol Vis 2008; 14:1737-1751. http://www.molvis.org/molvis/v14/a206

©2008 Molecular Vision http://www.molvis.org/molvis/

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