Table 5 of Fink, Mol Vis 2008; 14:1737-1751.

Table 5. SNP analysis.


Gene
SNP
Location		 Number of Minor allele frequencies (%) HET
(%)		 PIC
(%)		 p
(HWE)
cases controls cases controls
KCNJ14 AM922316 g.141C>G exon 2 32 34 50 39.71 34.9 37.2 0.0165
DHDH AM930537 g.351A>C intron 5 38 34 16.88 30.88 36.1 29.6 0.9928
BAX AM930538 g.493T>C intron 3 43 40 18.6 11.25 25.3 22.3 0.9197
CPT1C AM930539 g.569A>G intron 15 43 43 22.09 36.05 39.5 32.7 0.7016
PRKCG AM930540 g.161C>T intron 6 43 40 32.56 32.5 36.1 34.3 0.1077
SUV420H2 AM930545 g.129C>T intron 4 34 41 20.59 20.73 33.3 27.4 0.8861
SYT5 AM930544 g.71G>A intron 4 39 36 7.69 16.67 24 18.9 0.2376
TNNT1 AM930546 g.273A>G intron 10 43 39 6.98 5.13 9.8 10.8 0.18
TNNT1 AM930555 c.359A>G exon 11 33 31 22.73 4.84 21.6 21.3 <0.0001
TNNT1 AM930555 c.425A>C exon 13 40 40 23.75 26.25 32.5 30.5 0.233
RDH13 AM930553 c.57A>C 5′UTR 48 47 39.58 35.11 49.5 35.9 0.579
RDH13 AM930553 c.103C>G exon 1 48 46 22.92 29.35 35.1 31.1 0.3876
RDH13 AM930548 g.294C>T intron1 32 30 13.75 11.29 41.7 35.9 0.8591
RDH13 AM930553 c.151C>T exon 2 46 46 19.57 13.04 30.4 23.6 0.2694
RDH13 AM930549 g.8G>A intron 2 46 45 11.96 12.22 22 19 0.745
RDH13 AM930550 g.137T>C intron 3 45 40 12.22 21.25 25.9 23.7 0.5842
RDH13 AM930553 c.703C>A exon 5 48 45 11.46 21.11 23.7 23.4 0.2257
RDH13 AM930547 g.113G>C intron 5 40 38 17.5 23.68 30.8 27.3 0.6181
RDH13 AM930547 g.194C>T intron 5 44 43 11.36 20.93 27.6 23.4 0.8409
RDH13 AM930547 g.333C>T intron 6 41 43 17.07 19.77 8.7 8 0.9192
RDH13 AM930547 g.378A>G intron 6 39 42 14.29 20.24 19.8 25.6 0.6617
RDH13 AM930554 c.491G>C exon 7 48 43 7.29 21.28 44 29.9 0.9942
NALP7 AM930543 g.103T>G intron 4 29 35 45.35 26.32 23.4 18.6 0.2883
TTYH1 AM930542 g.365G>A intron7 29 35 17.24 7.14 23.4 18.6 0.2883
TFPT AM930551 c.337A>T exon 2 7 7 7.14 0 7.1 6.7 0.8898
TFPT AM930551 c.379G>T exon 2 7 7 7.14 0 7.1 6.7 0.8898
TFPT AM930541 g.120T>C intron 2 48 47 8.33 14.89 23.2 18.4 0.2018
TFPT AM930541 g.342G>A intron 3 39 42 2.56 3.57 6.2 5.8 0.7744
TFPT AM930552 c.176G>A exon 5 7 7 7.14 0 7.1 6.7 0.8898

The intragenic single nucleotide polymorphisms (SNPs, n=29) are shown with their number of genotyped cases and controls, minor allele frequencies of genotyped cases and controls, polymorphism information content (PIC), heterozygosity (HET), and test results for Hardy–Weinberg equilibrium (HWE).

Fink, Mol Vis 2008; 14:1737-1751. http://www.molvis.org/molvis/v14/a206

©2008 Molecular Vision http://www.molvis.org/molvis/

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