Table 4 of Fink, Mol Vis 2008; 14:1737-1751.
Gene |
Position HSA19 (Mb) |
BLAST hit BTA18 (Mb) |
Primer name |
Primer sequence (5′ -> 3′) |
Primer location |
Product size (bp) |
---|---|---|---|---|---|---|
KCNJ14 | 53.65 | 54.98 | KCNJ14_F | CCAGGGTTGGTGTGAGAACT | exon 2 | 342 |
KCNJ14_R | GCTCTTCCTACCTCCCTGGT | exon 2 | ||||
CA11 | 53.83 | 55.1 | CA11_F | GAAACTTCGTGCCAGGTG | exon 2 | 938 |
CA11_R | CACCAGGGTTCTTACCTTCTC | intron 3 | ||||
DHDH | 54.13 | 55.34 | DHDH_F | AGCTTCACCTGCAGCATC | exon 5 | 955 |
DHDH_R | TCCTTATGCTCCCCCTTC | exon 6 | ||||
BAX | 54.15 | 55.35 | BAX_F | TCAGGGGTGAGTTTGAGGTC | exon 2 | 556 |
BAX_R | GGTCCACCCAAACCAAAGA | intron 3 | ||||
HRC | 54.35 | 55.47 | HRC_F1 | TGGTCTGCGAAACTCTCTG | exon 7 | 530 |
HRC_R1 | CAGGGACGAGGAGAAATAGTC | exon 8 | ||||
HRC_F2 | TAACCTGGCTCCTCTGGTC | intron 5 | 652 | |||
HRC_R2 | GAGCAGAGAGTTTCGCAGAC | exon 7 | ||||
CPT1C | 54.89 | 56.05 | CPT1C_F1 | TGGACTTTTTCTGACCGACT | intron 3 | 960 |
CPT1C_R1 | GACTCAATGGGCTCACATCT | intron 6 | ||||
CPT1C_F2 | GCCATGGAGGACAAAGAGA | exon 15 | 652 | |||
CPT1C_R2 | CAGGGCGAGGCACTGTG | exon 16 | ||||
KCNC3 | 55.52 | 56.45 | KCNC3_F | CTCCCCATCCACCTTCTC | intron 2 | 337 |
KCNC3_R | GCTTCTTGCATCCTGTTCTC | intron 2 | ||||
MYBPC2 | 55.64 | 56.55 | MYBPC2_F | AAAGATGCTGCTGCCAAG | exon 3 | 619 |
MYBPC2_R | TTCTGCTCAGGAGATAAGATCC | intron 3 | ||||
KLK6 | 56.16 | 56.92 | KLK6_F | ACGTTCTCTCCTCCACCAG | intron 2 | 549 |
KLK6_R | GTGCTTGCCCAGGTACAC | exon 4 | ||||
ETFB | 56.55 | 57.33 | ETFB_F1 | AACCCCTTCTGTGAGATCG | exon 2 | 347 |
ETFB_R1 | CCAGGTGATTCGCTTCTG | exon 3 | ||||
ETFB_F2 | CTGGCAGAGAAGGAGAAGG | exon 3 | 818 | |||
ETFB_R2 | CTGTCATCTGCCCTGTTTG | exon 4 | ||||
PRKCG | 59.09 | 61.97 | PRKCG_F | TCTCCGATCCCTATGTGAAG | exon 6 | 808 |
PRKCG_R | AAGTCGTTTCGGGAGGTC | exon 7 | ||||
TFPT | 59.3 | 63.54 | TFPT_F | AGTGGAACAGGAGAGGCAGT | intron 2 | 448 |
TFPT_R | AGTGCTCAGACAAGGGTGTG | intron 3 | ||||
TTYH1 | 59.62 | 62.93 | TTYH1_F | AGGAGGAGACTGGCCTTG | exon 7 | 503 |
TTYH1_R | CCTGGTTGCAGAGGAAGTAG | exon 8 | ||||
KIR3DL1 | 60.02 | 62.79 | KIR3DL1_F | TGTGTTCTCGAGCCTCTTG | exon 3 | 1181 |
KIR3DL1_R | ATCTGTAGGTGCCCACACTC | exon 4 | ||||
NALP7 | 60.14 | 62.87 | NALP7_F | ACTCTGAGACACCCGAAGTG | exon 4 | 863 |
NALP7_R | AGCTGACATTCAGGGTAACG | exon 5 | ||||
RDH13 | 60.26 | 62.77 | RDH13_F | AGCCCTCCAGGTGATGTTTA | intron 5 | 714 |
RDH13_R | GGTGTCTGTGAGGGTGTGTG | intron 6 | ||||
TNNT1 | 60.34 | 62.7 | TNNT_F1 | CGCCGAAGAGCAAGAATA | exon 1 | 602 |
TNNT_R1 | AGAGGAGAGAGGGGAGAGG | intron 3 | ||||
TNNT_F2 | AAAAGGGCCCCAAATTATTA | intron 10 | 511 | |||
TNNT_R2 | TCCAGAGAAAGAGGGATGAA | intron 12 | ||||
SYT5 | 60.38 | 62.67 | SYT5_F | TCACTGGACTATGATTTCCAGAC | exon 4 | 681 |
SYT5_R | AGCGGTCGAAGTCGTACA | exon 6 | ||||
BRSK1 | 60.5 | 62.56 | BRSK1_F | CTCAACTCCATCCGCAAC | exon 15 | 556 |
BRSK1_R | GACATCTCCTCGGCAGTG | exon 16 | ||||
SUV420H2 | 60.55 | 62.52 | SUV420H2_F1 | AAAGTGGCTTCACCATCTTG | exon 4 | 931 |
SUV420H2_R1 | TCTCAGCAGCTCCTCGTC | exon 5 | ||||
SUV420H2_F2 | GGATGGCCCACTACTTCC | exon 3 | 493 | |||
SUV420H2_R2 | CATGGAATAACGGGTACAGG | exon 4 |