Table 4 of Fink, Mol Vis 2008; 14:1737-1751.


Table 4. PCR-primers used for SNP development on genomic DNA.



Gene
Position
HSA19
(Mb)
BLAST
hit BTA18
(Mb)

Primer
name


Primer sequence (5′ -> 3′)

Primer
location
Product
size
(bp)
KCNJ14 53.65 54.98 KCNJ14_F CCAGGGTTGGTGTGAGAACT exon 2 342



KCNJ14_R GCTCTTCCTACCTCCCTGGT exon 2
CA11 53.83 55.1 CA11_F GAAACTTCGTGCCAGGTG exon 2 938



CA11_R CACCAGGGTTCTTACCTTCTC intron 3
DHDH 54.13 55.34 DHDH_F AGCTTCACCTGCAGCATC exon 5 955



DHDH_R TCCTTATGCTCCCCCTTC exon 6
BAX 54.15 55.35 BAX_F TCAGGGGTGAGTTTGAGGTC exon 2 556



BAX_R GGTCCACCCAAACCAAAGA intron 3
HRC 54.35 55.47 HRC_F1 TGGTCTGCGAAACTCTCTG exon 7 530



HRC_R1 CAGGGACGAGGAGAAATAGTC exon 8



HRC_F2 TAACCTGGCTCCTCTGGTC intron 5 652



HRC_R2 GAGCAGAGAGTTTCGCAGAC exon 7
CPT1C 54.89 56.05 CPT1C_F1 TGGACTTTTTCTGACCGACT intron 3 960



CPT1C_R1 GACTCAATGGGCTCACATCT intron 6



CPT1C_F2 GCCATGGAGGACAAAGAGA exon 15 652



CPT1C_R2 CAGGGCGAGGCACTGTG exon 16
KCNC3 55.52 56.45 KCNC3_F CTCCCCATCCACCTTCTC intron 2 337



KCNC3_R GCTTCTTGCATCCTGTTCTC intron 2
MYBPC2 55.64 56.55 MYBPC2_F AAAGATGCTGCTGCCAAG exon 3 619



MYBPC2_R TTCTGCTCAGGAGATAAGATCC intron 3
KLK6 56.16 56.92 KLK6_F ACGTTCTCTCCTCCACCAG intron 2 549



KLK6_R GTGCTTGCCCAGGTACAC exon 4
ETFB 56.55 57.33 ETFB_F1 AACCCCTTCTGTGAGATCG exon 2 347



ETFB_R1 CCAGGTGATTCGCTTCTG exon 3



ETFB_F2 CTGGCAGAGAAGGAGAAGG exon 3 818



ETFB_R2 CTGTCATCTGCCCTGTTTG exon 4
PRKCG 59.09 61.97 PRKCG_F TCTCCGATCCCTATGTGAAG exon 6 808



PRKCG_R AAGTCGTTTCGGGAGGTC exon 7
TFPT 59.3 63.54 TFPT_F AGTGGAACAGGAGAGGCAGT intron 2 448



TFPT_R AGTGCTCAGACAAGGGTGTG intron 3
TTYH1 59.62 62.93 TTYH1_F AGGAGGAGACTGGCCTTG exon 7 503



TTYH1_R CCTGGTTGCAGAGGAAGTAG exon 8
KIR3DL1 60.02 62.79 KIR3DL1_F TGTGTTCTCGAGCCTCTTG exon 3 1181



KIR3DL1_R ATCTGTAGGTGCCCACACTC exon 4
NALP7 60.14 62.87 NALP7_F ACTCTGAGACACCCGAAGTG exon 4 863



NALP7_R AGCTGACATTCAGGGTAACG exon 5
RDH13 60.26 62.77 RDH13_F AGCCCTCCAGGTGATGTTTA intron 5 714



RDH13_R GGTGTCTGTGAGGGTGTGTG intron 6
TNNT1 60.34 62.7 TNNT_F1 CGCCGAAGAGCAAGAATA exon 1 602



TNNT_R1 AGAGGAGAGAGGGGAGAGG intron 3



TNNT_F2 AAAAGGGCCCCAAATTATTA intron 10 511



TNNT_R2 TCCAGAGAAAGAGGGATGAA intron 12
SYT5 60.38 62.67 SYT5_F TCACTGGACTATGATTTCCAGAC exon 4 681



SYT5_R AGCGGTCGAAGTCGTACA exon 6
BRSK1 60.5 62.56 BRSK1_F CTCAACTCCATCCGCAAC exon 15 556



BRSK1_R GACATCTCCTCGGCAGTG exon 16
SUV420H2 60.55 62.52 SUV420H2_F1 AAAGTGGCTTCACCATCTTG exon 4 931



SUV420H2_R1 TCTCAGCAGCTCCTCGTC exon 5



SUV420H2_F2 GGATGGCCCACTACTTCC exon 3 493



SUV420H2_R2 CATGGAATAACGGGTACAGG exon 4