Table 1 of Challa, Mol Vis 2008; 14:146-149. Table 1 of Challa, Mol Vis 2008; 14:146-149.
Table 1. Allelic association results for the 14 tagging single nucleotide polymorphisms in LOXL1
SNP |
Physical position (bp) |
Allele |
Frequency(%) |
OR (95% CI) |
p value |
r2
with rs3825942 |
|
| Cases | Controls | ||||||
| rs4886761 | 72002604 | T | 50.0 | 37.7 | 1.74(1.11, 2.72) | 0.0159 | 0.067 |
| rs1048661 (R141L) |
72006599 | G | 78.7 | 66.5 | 1.86(1.10, 3.15) | 0.0222 | 0 |
| rs3825942 (G153D) |
72006635 | G | 93.9 | 84.4 | 3.05(1.20, 7.76) | 0.0194 | – |
| rs2165241 | 72009255 | T | 66.7 | 48.7 | 2.30(1.40, 3.76) | 0.001 | 0.133 |
| rs4337252 | 72013818 | G | 68.4 | 50.7 | 2.30(1.40, 3.76) | 0.001 | 0.141 |
| rs12594472 | 72014193 | T | 3.1 | 2.2 | 1.43(0.37, 5.50) | 0.6081 | 0.002 |
| rs893816 | 72015517 | C | 78.6 | 66.4 | 1.89(1.12, 3.17) | 0.017 | 0.008 |
| rs893817 | 72016118 | A | 75.5 | 62.6 | 1.94(1.18, 3.20) | 0.0096 | 0 |
| rs2304719 | 72022553 | C | 82.7 | 71.0 | 2.21(1.22, 4.03) | 0.0098 | 0.311 |
| rs12437465 | 72030299 | T | 71.4 | 56.7 | 2.00(1.23, 3.26) | 0.0055 | 0.163 |
| rs12441138 | 72030950 | A | 5.1 | 3.6 | 1.63(0.56, 4.78) | 0.3801 | 0.007 |
| rs3522 | 72031397 | T | 42.7 | 40.9 | 1.12(0.72, 1.75) | 0.6349 | 0.089 |
| rs7173049 | 72031663 | A | 78.1 | 77.7 | 1.09(0.63, 1.88) | 0.783 | 0.131 |
| rs12442211 | 72032728 | G | 55.3 | 47.5 | 1.31(0.85, 2.03) | 0.2256 | 0.084 |