Table 2 of Pratt, Mol Vis 2008; 14:1414-1428.


Table 2. Criteria table for transcription response element inclusion in gene regulatory network models



TRE


p-value
Evolutionary
conservation
factor

Frequency
ratio
Promoter
E2F-1/V$E2F1_Q3_01 0.00095 2 3.725
Oct-1/V$OCT1_02 0.00801 3 4.25
Nkx2–5/V$NKX25_02 0.05404 2 2.3
Poly A/V$LDSPOLYA_B 0.07291 2 2.16
IRF/V$IRF_Q6_01 0.08969 2 2.33
COMP1/V$COMP1_01 0.03569 2 2.52

First intron

Evi-1/V$EVI1_05 0.00003 2 13.86
Oct-1/V$OCT1_02 0.00043 2 6.32
GR/V$GRE_C 0.00045 2 14.6
SMAD-3/V$SMAD3_Q6 0.00071 3 3.18
HNF-1/V$HNF1_01 0.00918 2 7.35
AP-1/V$AP1_C 0.01893 2 4.87