Table 3 of
Zhou, Mol Vis 2007;
13:2214-2221.Table 3 of
Zhou, Mol Vis 2007;
13:2214-2221.
Table 3. Genes expressed in the libraries at high- and medium-abundance
We have listed the medium- and high-abundance genes. The known high abundant genes including crystallins, rRNAs, and mitochondrial genes were excluded from this analysis.
Contig Gene names Counts % Total ---------- -------------------------------------- ------ ------- Human Contig1258 TEF 1 95 0.95 Contig1259 Rodopsin 95 0.95 Contig1257 Bestrophin 78 0.78 Contig1256 Alu7 subfamily 65 0.65 Contig1255 cGMP phosphodiesterase gamma subunit 59 0.59 Contig1249 Glutathione peroxidase 3 37 0.37 Contig1245 Transferrin 30 0.30 Contig1243 Thymosin beta 29 0.29 Contig1244 Transthyretin 29 0.29 Contig1238 Recoverin 27 0.27 Contig1240 Hypothetical protein 27 0.27 Contig1234 Tubulin 26 0.26 Contig1235 Ftsj homolog 26 0.26 Contig1233 Clusterin 25 0.25 Contig1227 Decorin 22 0.22 Contig1229 S-antigen 22 0.22 Contig1223 Creatine kinase 21 0.21 Contig1226 Beta-2-microglobin 21 0.21 Contig1219 Heat shock 70kDa protein 19 0.19 Contig1220 Lysosomal associated protein 19 0.19 Contig1214 TCTP 18 0.18 Contig1216 Guanylate cyclase activator 1A 18 0.18 Contig1217 Retinal photoreceptor synaptic protein 18 0.18 Contig1208 Guanine nucleotide binding protein 17 0.17 Contig1198 Myosin light polypeptide 6 15 0.15 Contig1201 MGP 15 0.15 Contig1192 Vimentin 14 0.14 Contig1193 Neuron Specific Enolase 14 0.14 Contig1194 Matrix-remodelling associated 7 14 0.14 Contig1196 Tyrosinase-related protein 1 14 0.14 Mouse Contig786 Hemoglobin 686 5.97 Contig774 Transthyretin 84 0.73 Contig770 Rhodopsin 64 0.56 Contig769 Prostaglandin D2 synthase 63 0.55 Contig761 Hypothetical protein 45 0.39 Contig756 Peptidylprolyl isomerase A 37 0.32 Contig754 Lens epithelial protein 36 0.31 Contig755 GST omega 1 36 0.31 Contig752 Fth1 protein 33 0.29 Contig751 Guanine nucleotide-binding protein 31 0.27 Contig749 N/A 28 0.24 Contig746 Thymosin beta-4 24 0.21 Contig741 Ccdc72 22 0.19 Contig742 Phosphoglycerate mutase 1 22 0.19 Contig743 Ferritin light chain 1 22 0.19 Contig744 S-antigen 22 0.19 Contig737 Aldolase 1 20 0.17 Contig735 Eno1 19 0.17 Contig736 Glutamic acid-rich protein 19 0.17 Contig733 Polyubiquitin 18 0.16 Contig728 Glutamate-ammonia ligase 17 0.15 Contig732 MGC80109 protein 17 0.15 Contig726 Guanylate cyclase activator 1a 16 0.14 Contig722 Chpt1 protein 14 0.12 Contig723 Phosducin 14 0.12 Contig720 CD59 13 0.11 Contig715 Fatty acid binding protein 5 12 0.10 Contig716 Igsf4a 12 0.10 Contig717 Integral membrane protein 2B 12 0.10 Contig718 Retinal degeneration 12 0.10 Contig714 PHGPx 12 0.10 Guinea pig Contig1112 Rod opsin 146 1.46 Contig1110 Hypothetical protein 99 0.99 Contig1108 S-antigen 69 0.69 Contig1107 Retrovirus-related pol polyprotein 62 0.62 Contig1106 Quinone oxidoreductase 60 0.60 Contig1105 EF1a 57 0.57 Contig1100 N/A 48 0.48 Contig1097 Aldolase 3 39 0.39 Contig1096 Guanine nucleotide binding protein 37 0.37 Contig1095 N/A 36 0.36 Contig1094 Ferritin L subunit 1 35 0.35 Contig1092 Hypothetical protein 34 0.34 Contig1093 ApoD 34 0.34 Contig1091 MHC class I antigen 29 0.29 Contig1089 Ferritin heavy chain 28 0.28 Contig1086 Glutamine synthetase 27 0.27 Contig1087 Tubulin 27 0.27 Contig1085 Putative senescence-associated protein 26 0.26 Contig1080 Similar to Ac1147 25 0.25 Contig1081 ApoE 25 0.25 Contig1083 Recoverin 25 0.25 Contig1077 HRG4 23 0.23 Contig1074 Clusterin isoform 2 21 0.21 Contig1075 Hypothetical protein 21 0.21 Contig1071 Actin 20 0.20 Contig1073 Prostaglandin D2 synthase 20 0.20 Contig1068 Enolase 1 18 0.18 Contig1064 Cystatin C 17 0.17 Contig1066 Guanylate cyclase activator 1a 17 0.17 Contig1065 Cofilin-1 17 0.17 Contig1062 rGb1 16 0.16 |