Table 3 of
Lupien, Mol Vis 2007;
13:1828-1841.
Table 3. Matching of cDNA from human Müller cells to known genes
NCBI, UCSC, and EMBL databases were used to match cDNA from human Müller cells to known genes.
Genebank Chromosomal accession Gene location Redundancy number -------------------------------------------- ------------- ---------- --------- Cell cycle/proliferation (1.7%) Cysteine and glycine-rich protein 2 (CSRP2) 12q21.1 NM_001321 Myc-induced nuclear antigen (MINA53) 3q11.2 NM_032778 Cellular metabolism (7.4%) Casein kinase-1 gamma-3 (CSNK1G3) 5q23 NM_004384 Cystathionase (CTH) 1p31.1 NM_001902 Dimethylarginine dimethylaminohydrolase 1p22 2 NM_012137 1 (DDAH1) Meningioma expressed antigen 5 splice 10q24.1-q24.3 NM_012215 variant, hyaluronidase (MGEA5) Myotubularin-related protein 2 (MTMR-2) 11q22 NM_016156 Phospholipase A2 group XII (PLA2G12) 4q25 NM_030821 Similar to procollagen-lysine 3q23-q24 NM_000935 2-oxoglutarate-5-dioxygenase (PLOD2) Thioredoxin reductase 1 (TXNRD1) 12q23-q24.1 NM_003330 Cell surface markers/cell adhesion (5.0%) Bullous pemphigoid antigen 1 (BPAG1) 6p12-p11 3 NM_001723 Cadherin 11 type 2 (CDH11) 16q22.1 NM_001797 Integrin beta-like 1 (ITGBL1) 13q33 NM_004791 Thymosin beta 4 (TMSB4X) Xq21.3-q22 NM_021109 Cytoskeleton (2.5%) Adducin 3 (ADD3) 10q24.2-q24.3 NM_016824 Diaphanous protein 9q21.31 NM_006729 Dystrophin (DMD) Xp21.2 NM_004018 Extracellular matrix (4.1%) Collagen type 1 alpha 2 (COL1A2) 7q22.1 NM_000089 Collagen type III alpha 1 (COL3A1) 2q31 2 NM_000090 Fibronectin (FN1) 2q34 2 NM_002026 Immune-related/blood cell proteins/serum (3.3%) CD24 antigen 6q21 NM_013230 Coagulation factor VIII associated Xq28 NM_90707 protein B Haplotype 11p15.4 DQ_856317 Immunoglobulin 22q11.2 DQ_87003 Protein processing/trafficking (9.9%) Phosphatidylinositol binding clathrin 11q14 NM_001008660 assembly protein (PICALM) Proteoglycan 1, secretory granule (PRG1) 10q22.1 7 NM_002727 Serpine-2 2q33-q35 3 NM_006216 Start domain containing 4, sterol 5q22.1 AL_832599 regulated (STARD4) Signaling molecules/growth factors/receptors (19.0%) Bridging integrator 3 (BIN3) 8p21.3 2 NM_018688 Extracellular sulfatase (SULF1) 8q13.2-q13.3 NM_015170 Interleukin 6 (IL-6) 7p21 2 NM_000600 Latent transforming growth factor beta 14q24 NM_000428 binding protein 2 (LTBP2) Metabotropic glutamate receptor 1 6q24 NM_000838 precursor (GRM1) Multiple endocrine neoplasia (MEN1) 11q13 NM_000244 Nerve growth factor beta polypeptide 1p13.1 NM_002506 (NGFB) Optic atrophy 1 (OPA1) 3q28-q29 NM_015560 Protein tyrosine phosphatase (PTP) 9q22.32 AY_171233 Serine/threonine kinase 3 (STK3) 8q22.2 NM_006281 Serine/threonine kinase 24 (STK24) 13q31.2-q32.3 8 NM_003576 Similar to amyloid beta A4 precursor 4p14 2 NM_173075 protein binding family(APBB2) Transferrin 3q29 NM_003234 Transcription/nuclear specific proteins (5.8%) C9orf5 9q31 NM_032012 C11orf23 11q13 NM_018312 C14orf31 14q22.1 NM_152330 Chromobox homolog 3 heterochromatin 7p15.2 NM_007276 like protein 1(CBX3) Pre B cell leukemia transcription 1q23 NM_002585 factor 1 (PBX1) Retinoblastoma binding protein 4 (RBBP4) 1p35.1 NM_005610 Zinc finger protein 258 (ZNF-258) 1p34.2 NM_007167 Translation/protein synthesis (22.3%) Eukaryotic translation elongation 6q14.1 18 NM_001402 factor-1 alpha-1 (EEF1A1) Glucan (1,4-alpha) branching 3p12.3 2 NM_000158 enzyme 1 (GBE1) Proprotein convertase subtilisin/kexin 9q21.3 NM_006200 type 5 (PCSK5) Translation initiation factor-3 20p12.1 6 U_78525 Miscellaneous (3.3%) Brain specific angiogenesis 6q12 NM_001704 inhibitor 3 (BAI3) Humanin (HN1) 3q11.2 AY_029066 Lung cancer metastasis related 11q12.1 NM_153450 protein (LCMR1) Suppression of tumorigenicity 7 1p13.2 NM_017744 like (ST7L) Hypothetical proteins (15.7%) CGI-141, hypothetical protein 12p12.1 AF_151899 CPEB4 (KIAA1673) 5q21 NM_030627 DKFZp667J0824 8q24.13 AL_832830 DKFZp686C0927 11q13.1 AL_832758 FISH (KIAA0418) 10q25.1 2 NM_014631 FLJ10702, hypothetical protein 3p26.1 NM_018184 FLJ20275, hypothetical protein 1p22.1 NM_017737 FLJ21308, hypothetical protein 5q11.1 NM_024615 FLJ23680, hypothetical protein 4q35.1 AK_075260 FLJ36175, hypothetical protein 2q24.2 NM_152528 KIAA0377 15q15.3 NM_014659 KIAA0774 13q12.3 NM_015233 Ran binding protein 17 (RANBP17) 5q34 NM_022897 RNF111 (DKFZp686H1966) 15q21 NM_017610 Similar to cyclic nucleotide gated 11q13.1 3 BX_538238 channel (cGMP, DKFZp686B0790) Target of Nesh-SH3 (TARSH) 3q12 NM_015429 |