Table 3 of
Lupien, Mol Vis 2007;
13:1828-1841.
Table 3. Matching of cDNA from human Müller cells to known genes
NCBI, UCSC, and EMBL databases were used to match cDNA from human Müller cells to known genes.
Genebank
Chromosomal accession
Gene location Redundancy number
-------------------------------------------- ------------- ---------- ---------
Cell cycle/proliferation (1.7%)
Cysteine and glycine-rich protein 2 (CSRP2) 12q21.1 NM_001321
Myc-induced nuclear antigen (MINA53) 3q11.2 NM_032778
Cellular metabolism (7.4%)
Casein kinase-1 gamma-3 (CSNK1G3) 5q23 NM_004384
Cystathionase (CTH) 1p31.1 NM_001902
Dimethylarginine dimethylaminohydrolase 1p22 2 NM_012137
1 (DDAH1)
Meningioma expressed antigen 5 splice 10q24.1-q24.3 NM_012215
variant, hyaluronidase (MGEA5)
Myotubularin-related protein 2 (MTMR-2) 11q22 NM_016156
Phospholipase A2 group XII (PLA2G12) 4q25 NM_030821
Similar to procollagen-lysine 3q23-q24 NM_000935
2-oxoglutarate-5-dioxygenase (PLOD2)
Thioredoxin reductase 1 (TXNRD1) 12q23-q24.1 NM_003330
Cell surface markers/cell adhesion (5.0%)
Bullous pemphigoid antigen 1 (BPAG1) 6p12-p11 3 NM_001723
Cadherin 11 type 2 (CDH11) 16q22.1 NM_001797
Integrin beta-like 1 (ITGBL1) 13q33 NM_004791
Thymosin beta 4 (TMSB4X) Xq21.3-q22 NM_021109
Cytoskeleton (2.5%)
Adducin 3 (ADD3) 10q24.2-q24.3 NM_016824
Diaphanous protein 9q21.31 NM_006729
Dystrophin (DMD) Xp21.2 NM_004018
Extracellular matrix (4.1%)
Collagen type 1 alpha 2 (COL1A2) 7q22.1 NM_000089
Collagen type III alpha 1 (COL3A1) 2q31 2 NM_000090
Fibronectin (FN1) 2q34 2 NM_002026
Immune-related/blood cell proteins/serum (3.3%)
CD24 antigen 6q21 NM_013230
Coagulation factor VIII associated Xq28 NM_90707
protein B
Haplotype 11p15.4 DQ_856317
Immunoglobulin 22q11.2 DQ_87003
Protein processing/trafficking (9.9%)
Phosphatidylinositol binding clathrin 11q14 NM_001008660
assembly protein (PICALM)
Proteoglycan 1, secretory granule (PRG1) 10q22.1 7 NM_002727
Serpine-2 2q33-q35 3 NM_006216
Start domain containing 4, sterol 5q22.1 AL_832599
regulated (STARD4)
Signaling molecules/growth factors/receptors (19.0%)
Bridging integrator 3 (BIN3) 8p21.3 2 NM_018688
Extracellular sulfatase (SULF1) 8q13.2-q13.3 NM_015170
Interleukin 6 (IL-6) 7p21 2 NM_000600
Latent transforming growth factor beta 14q24 NM_000428
binding protein 2 (LTBP2)
Metabotropic glutamate receptor 1 6q24 NM_000838
precursor (GRM1)
Multiple endocrine neoplasia (MEN1) 11q13 NM_000244
Nerve growth factor beta polypeptide 1p13.1 NM_002506
(NGFB)
Optic atrophy 1 (OPA1) 3q28-q29 NM_015560
Protein tyrosine phosphatase (PTP) 9q22.32 AY_171233
Serine/threonine kinase 3 (STK3) 8q22.2 NM_006281
Serine/threonine kinase 24 (STK24) 13q31.2-q32.3 8 NM_003576
Similar to amyloid beta A4 precursor 4p14 2 NM_173075
protein binding family(APBB2)
Transferrin 3q29 NM_003234
Transcription/nuclear specific proteins (5.8%)
C9orf5 9q31 NM_032012
C11orf23 11q13 NM_018312
C14orf31 14q22.1 NM_152330
Chromobox homolog 3 heterochromatin 7p15.2 NM_007276
like protein 1(CBX3)
Pre B cell leukemia transcription 1q23 NM_002585
factor 1 (PBX1)
Retinoblastoma binding protein 4 (RBBP4) 1p35.1 NM_005610
Zinc finger protein 258 (ZNF-258) 1p34.2 NM_007167
Translation/protein synthesis (22.3%)
Eukaryotic translation elongation 6q14.1 18 NM_001402
factor-1 alpha-1 (EEF1A1)
Glucan (1,4-alpha) branching 3p12.3 2 NM_000158
enzyme 1 (GBE1)
Proprotein convertase subtilisin/kexin 9q21.3 NM_006200
type 5 (PCSK5)
Translation initiation factor-3 20p12.1 6 U_78525
Miscellaneous (3.3%)
Brain specific angiogenesis 6q12 NM_001704
inhibitor 3 (BAI3)
Humanin (HN1) 3q11.2 AY_029066
Lung cancer metastasis related 11q12.1 NM_153450
protein (LCMR1)
Suppression of tumorigenicity 7 1p13.2 NM_017744
like (ST7L)
Hypothetical proteins (15.7%)
CGI-141, hypothetical protein 12p12.1 AF_151899
CPEB4 (KIAA1673) 5q21 NM_030627
DKFZp667J0824 8q24.13 AL_832830
DKFZp686C0927 11q13.1 AL_832758
FISH (KIAA0418) 10q25.1 2 NM_014631
FLJ10702, hypothetical protein 3p26.1 NM_018184
FLJ20275, hypothetical protein 1p22.1 NM_017737
FLJ21308, hypothetical protein 5q11.1 NM_024615
FLJ23680, hypothetical protein 4q35.1 AK_075260
FLJ36175, hypothetical protein 2q24.2 NM_152528
KIAA0377 15q15.3 NM_014659
KIAA0774 13q12.3 NM_015233
Ran binding protein 17 (RANBP17) 5q34 NM_022897
RNF111 (DKFZp686H1966) 15q21 NM_017610
Similar to cyclic nucleotide gated 11q13.1 3 BX_538238
channel (cGMP, DKFZp686B0790)
Target of Nesh-SH3 (TARSH) 3q12 NM_015429
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