Table 3 of
Baharvand, Mol Vis 2007;
13:1711-1721.Table 3 of
Baharvand, Mol Vis 2007;
13:1711-1721.
Table 3. Proteins with variable expression pattern across replication identified by MALDI TOF-TOF MS analysis and Mascot search. All the identified proteins relate to Homo sapiens
The "Spot number" column indicates the number corresponding to the 2D gel in Figure 2. The "Experimental" column denotes the experimental masses measured by MS. The "Theoretical" column indicates the theoretical masses. The "% covered" indicates the percent of sequence which has been covered by MS analysis. "PMF" is the number of matched peptide resulting from peptide mass fingerprinting and MS/MS.
Mascot
Spot Experimental Theoretical Gene score/ PMF/
number (Mr/pI) (Mr/pI) Protein name GenBank Swiss-Prot Symbol % covered MS-MS
------ ------------ ----------- ---------------------------- ----------- ---------- ------ --------- -----
6 6.27/24 5.73/29 collagen VI, alpha-1 gi|30032 P12109 COL6A1 538/33 8/6
8 6.46/36 5.52/48 collagen VI, alpha-1 gi|30030 P12109 COL6A1 703/23 8/8
9 6.74/35 5.52/48 collagen VI, alpha-1 gi|30030 P12109 COL6A1 302/11 4/4
10 6.51/39 7.08/36 Fibrinogen beta chain gi|24987624 P02675 FGB 713/62 26/8
11 6.47/41 6.69/42 Heat shock 70 kDa protein 1 gi|6729803 P08107 HSPA1A 470/45 12/6
12 6.74/38 7.08/36 Fibrinogen beta chain gi|24987624 P02675 FGB 240/65 25/7
17 5.53/32 5.11/78 Transglutaminase 2 isoform a gi|39777597 P21980 TGM2 395/16 10/4
28 5.40/30 5.86/35 Fibrinogen gamma chain gi|24987625 P02679 FGG 538/49 14/6
29 5.27/30 5.86/35 Fibrinogen gamma chain gi|24987625 P02679 FGG 165/48 13/3
31 5.30/38 6.10/22 Collagen VI, alpha-2 gi|52545536 P12110 COL6A2 226/33 6/4
51 5.17/42 8.47/77 Integrin alpha-6 gi|30046796 Q86VL6 ITGA6 290/10 7/4
95 6.29/39 7.08/36 Fibrinogen beta chain gi|24987624 P02675 FGB 656/53 23/7
105 6.09/40 5.84/38 Fibrinogen beta chain gi|2781208 P02675 FGB 673/55 21/8
149 6.19/65 7.62/75 TGF-beta-induced
protein ig-h3 gi|4507467 Q15582 TGFBI 528/30 16/8
160 6.40/51 8.20/25 Tubulointerstitial nephritis
antigen-like 1 gi|14290553 Q9GZM7 TINAGL1 156/24 5/3
293 5.75/67 6.4/121 Integrin alpha-6 gi|5726563 P23229 ITGA6 417/13 12/7
306 5.20/93 5.70/29 collagen VI, alpha-1 gi|30032 P12109 COL6A1 142/18 3/2
361 5.90/41 5.84/38 Fibrinogen beta chain gi|2781208 P02675 FGB 706/59 25/7
|