Table 2 of
Liskova, Mol Vis 2007;
13:1339-1347.Table 2 of
Liskova, Mol Vis 2007;
13:1339-1347.
Table 2. Simple genetic polymorphisms genotyped across the KERA genomic sequence in the proband, an unaffected parent, and one Finnish subject
Record identifiers (rsID) of 33 nucleotide variations found in the Single Nucleotide Polymorphism dbSNP database with primer sequences used for amplification of sequenced PCR products, as well as their size are shown (range 290 to 492 bp).
Amplicon
Polymorphism size
number rsID Primer pairs (5'-3') (bp)
------------ ---------- -------------------------- --------
1 rs10859101 CAATAAAAAGGACACATTTGTGTATG 423
TTTGCAGTTTAAGTGGATTTCA
2 rs11105952 same as rs10859101
3 rs2464171 CATATTCCCCATTGCTCTCG 410
TCAAACTTGTACCACCAACAGC
4 rs2701166 TTGGGGGAAACAGATAGG 465
GAAAATGGTGGCCGAGAGC
5 rs2245775 GGCTTGAGTTCTTTGTCATTCA 488
TCCCCCAAACAAAAGTTCAG
6 rs1920771 same as rs2245775
7 rs2268580 same as rs2245775
8 rs2268579 same as rs2245775
9 rs1920772 same as rs2245775
10 rs2735341 same as rs2245775
11 rs1920773 CCAGAATTCCCACAAAATGC 419
CATACAGGAGAGAAGGCCAGTT
12 rs2540006 same as rs1920773
13 rs3216597 GAACTTGTCTTAAGCAATATGATGGA 415
TCACAGGCTTTATCAGCCAAT
14 rs17018619 TGCAATAGCCAGAACCTGAG 475
TGTTTCTCAGGGAACACCAG
15 rs11105956 TGTTTAGGAGTGAGGCAGCA 404
TTGTCCTTGGGCAAATATCC
16 rs2041711 GTTGTGCTGCCTGGGTATTA 410
ATTGTCCGTGGGGCTTTTA
17 rs2735337 GGGACTTACAGGCAATCGTC 492
AGCAGTTCCCAGTGGAAAAA
18 rs2735336 same as rs2735337
19 rs2540004 same as rs2735337
20 rs734722 ATCTGCAGCACCTTCACCTT 481
GTTTCAGGCATCAGCTGTCA
21 rs1920775 same as rs734722
22 rs737111 GGACAATGCCTTTCAAAGAGAC 441
GGGCAACACATTTGCTCTTC
23 rs2735335 GAGGTCTCAAAGAAATTCCTGCT
GCATATTCCTCAGGGCATTC 441
24 rs2735334 same as rs2735335
25 rs2540003 same as rs2735335
26 rs12320366 TGTTGACATATTTTCACCTCTTCC 402
TCAAATGGCTTTTCAGGAATG
27 rs2735333 same as rs12320366
28 rs2701164 TTGAGAGGTTGAGCTAGAGAATAACA 431
TAGGCACCATATGCAAAGCA
29 rs1990550 GAGCCTGGGTCAATCCATTA 290
TGCCTTCCAGGAATACACC
30 rs1990549 same as rs1990550
31 rs2735330 TCAGGAACAGATAAAATATGTCCA 489
TTCCACTTTGACAGGGCTTC
32 rs1990548 same as rs2735330
33 rs2540002 same as rs2735330
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