Table 1 of
Guyon, Mol Vis 2007;
13:1094-1105.Table 1 of
Guyon, Mol Vis 2007;
13:1094-1105.
Table 1. Haplotyping marker characteristics and associated polymorphism
Genotypes were assessed by sequencing PCR products using upper (U) or lower (L) primers, or by digestion with the restriction enzyme indicated in parenthesis. 1. Polymorphism coordinates were based on the version (v2.0) of the canine sequence. 2. Expected heterozygosity (HE) was calculated from the subset of the ten most outbred animals.
Size
Name Primer U Primer L (bp) Protocol Polymorphism coordinates (1) HE (2)
----------- ----------------------- ---------------------- ---- ------------------ ---------------------------------- ------
RPGRIP-5fd2 ATGGCATGAATGCAGTGAAC CTGGTGTCCTCTGGTCCTGT 518 sequencing (U) chr15:21,323,467 C/T 0,27
RPGRIP-og ATGTCTGTGTGTCTATCAGGTG GTTTGCAGAACACATGGCATTC 305 digestion (Bsu36i) 21 364 923 A/G 0,27
RPGRIP-int2 TTGAATGGTGGGCTAGGAAG ACCCAAGGCCACTTTACTCA 702 sequencing (U) 21 372 856 A/G 0,43
RPGRIP-3f GATGAGGTGATGAGGGCCTA CCGTGGTTAACGTTTGCTTT 1463 digestion (AvaII) 21 434 804 C/T 0,50
RANBP-3fc TTGGTGAATGCCAAATGAAA AGCCTGCTGAATGGTTGAAG 717 sequencing (U) chr10:38,199,076 C/T 0,47
RANBP-int23 ATGCAACAGATGCAAATCCA CGTTCCTGCCCTTCAAGTAA 1127 sequencing (U) 38 224 775 G/T 0,49
RANBP-int17 GTGGAAACATTCTGGGGAGA GGGCTTTTTGAATGCTGTGT 1146 sequencing (U) 38 238 339 T/C 0,19
38 238 358 A/T 0,10
RANBP-int16 TCCCCAATCGCAGAAACTAC CTCCACCAGGTGTGAATCCT 1197 sequencing (U) 38 242 341 A/C 0,27
RANBP-5f TTGACATCTTGGGTCCAGTG TGAATGGGGAAATGATTGCT 1156 digestion (AgeI) 38 272 947 G/T 0,39
sequencing (L) 38 273 061 A/G 0,19
NPM-snp7 GGCAGAACCCACCTGTAGAA TTTCTTCGCCCTCAATGTCT 631 sequencing (U) chr4:43,891,628 A/G 0,27
NPM-3fb CAGACCCTTAGGCAGACGAG TTTTTGCAGGCACTTCCTTT 1182 sequencing (U) 43,947,526-7 delAA 0,39
NPM-snp3 TTCTTTGAGCCCATGGAAGT CTGGCACCCCTCCAAAATA 512 sequencing (U) 43,967,091 C/T 0,49
NPM-5f GAAATTTGATGGGCAGAGGA GCCAGGAGCTAGAGGTGATG 1145 digestion (AflIII) 43,971,373-4 insTGTA 0,43
PDE-snp16 TGGTAGGCTGATTTTCTGGTG CCTGCTTTCCTGGACAAACT 499 sequencing (U) chr25:46,552,131 A/G 0,27
46 552 193 C/T 0,19
46 552 331 C/T 0,10
PDE-snp1 TTTGCATTTCCGAGCTCTTT ACCAAAACAGGATGGACGAG 511 sequencing (U) 46 577 289 C/T 0,27
PDE-snp10 TTTGGAAAATCAGACGCAAA GCTTGATCTCGGGGTTATGA 531 sequencing (U) 46 647 231 A/G 0,43
NPHP-snp2 GAAATTAACCCAAACTTCAGCAA TTCCTTGGCTGTGACTTCCT 464 sequencing (U) chr33:28,099,052 A/G 0,49
28 099 062 A/C 0,43
NPHP-snp3b TTGCATCAACACCTCATTGTC CCCATCGTTTGATATTCAGAAA 427 sequencing (U) 28 126 211 C/T 0,19
NPHP-snp5b CTGGCTGATGAGAGGTCTTG GCTCCTTTTCCTACCTCAACAA 344 sequencing (U) 28 155 878 A/T 0,49
28 155 919 G/T 0,19
ABCR-snp6 TTACAGGCCTTCCTCCACAC GGCCAAAGGAAGACACGATA 700 sequencing (U) chr6:58,159,994 C/T 0,49
58 160 171 C/T 0,10
58 160 466 A/G 0,27
ABCR-snp3 TGGTGTTTGGCTTCTGTGAA CCTTCGGACATGGTTCAGTT 600 sequencing (U) 58 257 868 G/T 0,10
58 257 905 C/T 0,39
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