Table 5 of
Ando, Mol Vis 2007;
13:1038-1044.Table 5 of
Ando, Mol Vis 2007;
13:1038-1044.
Table 5. Haplotypes of the Japanese rhodopsin gene locus
A total of 136 subjects comprised of 68 retinitis pigmentosa patients (RP) and 68 controls (Ctr) were analyzed. One insertion/deletion (Indel) variation was linked to SNP11. Red letters represent haplotype-tagging SNPs.
SNP name Number of chromosomes
Haplotype -------------------------------------------------------------------- ---------------------------
name 1 2 3 4 5 6 7 Indel 8 9 10 11 12 13 14 15 16 17 18 19 20 RP Ctl Sum Frequency χ2 p value
--------- ------------------- ----- -------------------------------------- -- ---- --- --------- ---- ------
H01 T C G A A C T Ins G C G G C C A G C A A T G 45 29 74 0.272 4.75 0.029
H02 C A A G A C T Del G C G A C C T G C G G T G 30 26 56 0.206 0.36 0.548
H03 T C G A A C T Ins G C G G C C A G C A A T A 12 27 39 0.143 6.73 0.009
H04 C A G G A C G Ins G C G G C C T A C G G T G 16 23 39 0.143 1.47 0.225
H05 C A A G A C G Ins G C G G C C T A C G G T G 15 13 28 0.103 0.16 0.690
H06 C A G G A T T Ins G T G G T T T G A A G T G 8 6 14 0.051 0.30 0.583
H07 C A G G G C G Ins G C G G C C T A C G G T G 8 4 12 0.044 1.39 0.238
H08 C A G G A C T Ins T C A G C C T G C A G C G 1 3 4 0.015 1.01 0.313
H09 T C G G A C T Ins G C G G C C A G C A A T G 0 1 1 0.004
H10 T A A G A C G Ins G C G G C C T A C G G T G 1 0 1 0.004
H11 C A G G A T G Ins G T G G T T T G A A G T G 0 1 1 0.004
H12 C A G G G C T Ins G C G G C C T A C G G T G 0 1 1 0.004
H13 C A G G A C T Ins T C A G C C A G C A G C G 0 1 1 0.004
H14 C A G G A C T Ins T C A G C C T G C A G T G 0 1 1 0.004
--------- ---------------
Total 136 136 272 1.000
|