Table 2 of
Mutti, Mol Vis 2007;
13:1012-1019.
Table 2. Single nucleotide polymorphisms analyzed in the current study with minor allele frequencies for parents in the sample compared to other sources
Presentation of estimates from various sources allows for comparison of minor allele frequencies used in this analysis against the variability in frequency across sources. The AB, HapMap, and AGI frequencies taken from CEPH (Centre d'Etude du Polymorphisme Humain)
Minor allele Gene Locus rs number Genotyping source frequencies ------- -------- --------- ------------------------------ ----------- FGF2 4q27 rs1048201 AB 0.16 T HapMap 0.25 T AGI 0.13 T Calculated from sample parents 0.22 T 4q27 rs1982569 HapMap 0.49 T Calculated from sample parents 0.44 C 4q27 rs308447 HapMap 0.37 T Calculated from sample parents 0.30 T PAX6 11p13 rs3026401 HapMap 0.17 C Calculated from sample parents 0.20 C 11p13 rs662702 HapMap 0.11 T Calculated from sample parents 0.03 T 11p13 rs1506 AB 0.19 T HapMap 0.15 T Calculated from sample parents 0.18 T 11p13 rs2239789 AB 0.44 T HapMap 0.44 T Calculated from sample parents 0.46 T 11p13 rs628224 HapMap 0.07 A Calculated from sample parents 0.13 A BDNF 11p14.1 rs6265 AB 0.22 T HapMap 0.18 T AGI 0.23 T Calculated from sample parents 0.22 T COL2A1 12q13.11 rs1635529 AB 0.11 T Calculated from sample parents 0.21 T 12q13.11 rs1635550 AB 0.11 A HapMap 0.16 A AGI 0.21 A Calculated from sample parents 0.24 A 12q13.11 rs2248990 AB 0.30 C Calculated from sample parents 0.49 C 12q13.11 rs3737548 AGI 0.47 G Calculated from sample parents 0.26 G COL18A1 21q22.3 rs9983675 AB 0.27 G Calculated from sample parents 0.37 A 21q22.3 rs1051298 HapMap 0.42 A Calculated from sample parents 0.45 A 21q22.3 rs2236479 AB 0.47 A HapMap 0.31 A Calculated from sample parents 0.19 A |