Table 2 of Mutti, Mol Vis 2007; 13:1012-1019.


Table 2. Single nucleotide polymorphisms analyzed in the current study with minor allele frequencies for parents in the sample compared to other sources

Presentation of estimates from various sources allows for comparison of minor allele frequencies used in this analysis against the variability in frequency across sources. The AB, HapMap, and AGI frequencies taken from CEPH (Centre d'Etude du Polymorphisme Humain)

                                                                     Minor
                                                                    allele
 Gene      Locus     rs number         Genotyping source          frequencies
-------   --------   ---------   ------------------------------   -----------
FGF2      4q27       rs1048201   AB                                 0.16 T
                                 HapMap                             0.25 T
                                 AGI                                0.13 T
                                 Calculated from sample parents     0.22 T
          4q27       rs1982569   HapMap                             0.49 T
                                 Calculated from sample parents     0.44 C
          4q27       rs308447    HapMap                             0.37 T
                                 Calculated from sample parents     0.30 T
PAX6      11p13      rs3026401   HapMap                             0.17 C
                                 Calculated from sample parents     0.20 C
          11p13      rs662702    HapMap                             0.11 T
                                 Calculated from sample parents     0.03 T
          11p13      rs1506      AB                                 0.19 T
                                 HapMap                             0.15 T
                                 Calculated from sample parents     0.18 T
          11p13      rs2239789   AB                                 0.44 T
                                 HapMap                             0.44 T
                                 Calculated from sample parents     0.46 T
          11p13      rs628224    HapMap                             0.07 A
                                 Calculated from sample parents     0.13 A
BDNF      11p14.1    rs6265      AB                                 0.22 T
                                 HapMap                             0.18 T
                                 AGI                                0.23 T
                                 Calculated from sample parents     0.22 T
COL2A1    12q13.11   rs1635529   AB                                 0.11 T
                                 Calculated from sample parents     0.21 T
          12q13.11   rs1635550   AB                                 0.11 A
                                 HapMap                             0.16 A
                                 AGI                                0.21 A
                                 Calculated from sample parents     0.24 A
          12q13.11   rs2248990   AB                                 0.30 C
                                 Calculated from sample parents     0.49 C
          12q13.11   rs3737548   AGI                                0.47 G
                                 Calculated from sample parents     0.26 G
COL18A1   21q22.3    rs9983675   AB                                 0.27 G
                                 Calculated from sample parents     0.37 A
          21q22.3    rs1051298   HapMap                             0.42 A
                                 Calculated from sample parents     0.45 A
          21q22.3    rs2236479   AB                                 0.47 A
                                 HapMap                             0.31 A
                                 Calculated from sample parents     0.19 A

Mutti, Mol Vis 2007; 13:1012-1019 <http://www.molvis.org/molvis/v13/a110/>
©2007 Molecular Vision <http://www.molvis.org/molvis/>
ISSN 1090-0535