Appendix 1.

Table A: Previously-characterized proteins that were quantified and had less than 50% change in expression level after thyroid hormone (TH) treatment. A T-to-C ratio represents the fold increase (if greater than 1) or fold decrease (if less than 1) of the reported peptide in the retina of trout treated with thyroid hormone.

Table B: Previously-characterized proteins that were identified but not quantified after TH treatment. Some proteins were identified and detected as a specific singleton. A singleton TH indicates the peptide was only detected in retina from TH-treated trout. A singleton Con indicates peptide was only detected in retina from untreated control trout.

Table C: Uncharacterized proteins that were quantified and had greater than 50% change in expression level after TH treatment. A T:C ratio represents the fold increase (if greater than 1) or fold decrease (if less than 1) of the reported peptide in the retina of trout treated with thyroid hormone.

Table D: Uncharacterized proteins that were quantified and had less than 50% change in expression level after TH treatment. A T-to-C ratio represents the fold increase (if greater than 1) or fold decrease (if less than 1) of the reported peptide in the retina of trout treated with thyroid hormone.

Table E: Uncharacterized proteins that were identified but not quantified in expression level after TH treatment. Some proteins were identified and detected as a specific singleton. A singleton TH indicates the peptide was only detected in retina from TH-treated trout. A singleton Con indicates the peptide was only detected in retina from untreated control trout.

To access these data, click or select the words "supplementary tables". This will initiate the download of a compressed (zip) archive. This file should be uncompressed with an appropriate program (the particular program will depend on your operating system). Once extracted, you will have a folder (or directory) containing the five tables described above. The files are tab delimited text. Most spreadsheet programs will import files in this format.