Table 9 of
Medvedovic, Mol Vis 2006;
12:422-440.
Table 9.
Gene ontology (GO) categories of the gene cluster displaying a weak decrease in relative mRNA levels early during lens regeneration compared to intact control lens.
Number
of genes False
in the discovery
Main GO category category Gene category rate
------------------ -------- ------------------------------------------- ---------
Biological Process 16 Macromolecule biosynthesis 2.9E-03
17 Biosynthesis 5.3E-03
12 Protein biosynthesis 6.1E-03
2 RNA elongation 2.8E-02
3 Purine ribonucleoside triphosphate 5.3E-02
biosynthesis
3 Purine nucleoside triphosphate biosynthesis 5.3E-02
3 Ribonucleoside triphosphate biosynthesis 5.3E-02
7 Perception of abiotic stimulus 5.3E-02
7 Sensory perception 5.3E-02
3 Purine ribonucleoside triphosphate 5.3E-02
metabolism
3 Ribonucleoside triphosphate metabolism 5.3E-02
3 Nucleoside triphosphate biosynthesis 5.3E-02
5 Perception of chemical substance 5.3E-02
5 Chemosensory perception 5.3E-02
3 Purine nucleoside triphosphate metabolism 5.3E-02
14 G-protein coupled receptor protein 5.8E-02
signaling pathway
7 Perception of external stimulus 5.8E-02
3 Purine ribonucleotide biosynthesis 5.8E-02
3 Nucleoside triphosphate metabolism 5.8E-02
3 Purine nucleotide biosynthesis 6.9E-02
3 Ribonucleotide biosynthesis 7.1E-02
2 Phosphoenolpyruvate-dependent sugar 7.6E-02
phosphotransferase system
3 Purine ribonucleotide metabolism 7.6E-02
3 Purine nucleotide metabolism 7.8E-02
3 Ribonucleotide metabolism 7.8E-02
2 Oxidative phosphorylation 8.7E-02
2 ATP biosynthesis 9.8E-02
2 Nucleoside phosphate metabolism 9.8E-02
Cellular Component 10 Ribosome 2.0E-03
12 Ribonucleoprotein complex 2.0E-03
14 Mitochondrion 1.2E-02
3 Small ribosomal subunit 5.3E-02
2 Transport vesicle 5.3E-02
3 Organellar ribosome 5.8E-02
3 Mitochondrial ribosome 5.8E-02
3 Mitochondrial matrix 9.8E-02
2 Mitochondrial large ribosomal subunit 9.9E-02
2 Organellar large ribosomal subunit 9.9E-02
Molecular Function 10 Structural constituent of ribosome 1.1E-03
13 Structural molecule activity 1.7E-02
10 RNA binding 2.2E-02
4 Hydrogen ion transporter activity 7.8E-02
4 Monovalent inorganic cation transporter 7.8E-02
activity
2 Oxidoreductase activity, acting on heme 7.8E-02
group of donors, oxygen as acceptor
2 Cytochrome-c oxidase activity 7.8E-02
2 Oxidoreductase activity, acting on heme 7.8E-02
group of donors
2 Heme-copper terminal oxidase activity 7.8E-02
2 DNA dependent ATPase activity 8.1E-02
2 Damaged DNA binding 9.7E-02
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