Table 1 of
Nickerson, Mol Vis 2006;
12:1565-1585.
Table 1. GenBank Accession or scaffold numbers of the sequences used in this study
All the sequences of the tetrapods are readily obtained by Blast searches of the public databases. Four of the fish (fugu, zebrafish, medaka, and Tetraodon) are similarly readily obtained from the latest versions of the whole genome sequences. The goldfish sequence was obtained from GenBank. We assembled a seuqnece from stickleback and fathead minnow sequences of several EST sequences, which are identified by accession number. We emphasize that we did not conduct the sequencing of stickleback or the fathead minnow ourselves.
GenBank Accession or scaffold Species number Submitter or reference --------------------------- ---------------- ------------------------------------- Tetrapods: Chimpanzee NW_001222167 Washington University Genome Sequencing Center, Pan_troglodytes-2.1, March 2006 human NM_002900 [66,67] cow M20748 [26] Dog NW_876311 The Broad Institute of MIT/Harvard and Agencourt Bioscience, 10 May rat NW_047469 chromosome 16 genomic contig, version 3.4 'November 2004 Update' Baylor College of Medicine Human Genome Sequencing, part of the Rat Genome Sequencing Consortium mouse AY682090 [48] oppossum AAFR03024396 03-JAN-2006, The Broad Institute of MIT and Harvard. monkey NW_001124202 Mmul_051212, February 2006 Macaca (macacca mulatta) mulatta Genome Sequencing Consortium chicken NW_060392 [51] Xenopus tropicalis scaffold 653 DOE Joint Genome Institute, v4.1 Teleost Fish: zebrafish CR450691, X85957 Wellcome Trust Sanger Institute [27] Takifugu rubripes scaffold 3 Version 4, June 2005, The International Fugu Genome Consortium Tetraodon nigroviridis SCAFFOLD 10211 Chromosome 2, The Tetraodon nigroviridis V7 assembly (February 2004) from Genoscope and the Broad Institute of MIT and Harvard medaka (Oryzias_latipes) scaffold 1465 National Institute of Genetics (NIG) and the University of Tokyo (October 2005) Goldfish (Carasius auratus) X80802 [68] Gasterosteus aculeatus DN689753 The Stanford Human Genome (three spined stickleback) DN683402 Center (submitted 2003), DN695303 unpublished ESTs. DN686722 DN680257 DN684040 DN694734 DN682976 DN691753 DN685347 DN681402 DN686085 DN689752 DN680256 DN685346 DN686721 DN686084 DN683401 DN691752 DN684039 DN691083 DN681401 DN694733 DN695302 DN691082 Pimephales promelas DT130195 DOE Joint Genome Institute, (fathead minnow) DT138893 unpublished (12-JAN-2006) DT138894 DT140312 DT180381 DT182368 DT191533 DT191534 DT191534 |