Table 1 of
Nickerson, Mol Vis 2006;
12:1565-1585.Table 1 of
Nickerson, Mol Vis 2006;
12:1565-1585.
Table 1. GenBank Accession or scaffold numbers of the sequences used in this study
All the sequences of the tetrapods are readily obtained by Blast searches of the public databases. Four of the fish (fugu, zebrafish, medaka, and Tetraodon) are similarly readily obtained from the latest versions of the whole genome sequences. The goldfish sequence was obtained from GenBank. We assembled a seuqnece from stickleback and fathead minnow sequences of several EST sequences, which are identified by accession number. We emphasize that we did not conduct the sequencing of stickleback or the fathead minnow ourselves.
GenBank
Accession
or scaffold
Species number Submitter or reference
--------------------------- ---------------- -------------------------------------
Tetrapods:
Chimpanzee NW_001222167 Washington University Genome
Sequencing Center,
Pan_troglodytes-2.1, March 2006
human NM_002900 [66,67]
cow M20748 [26]
Dog NW_876311 The Broad Institute of
MIT/Harvard and Agencourt
Bioscience, 10 May
rat NW_047469 chromosome 16 genomic contig,
version 3.4 'November 2004 Update'
Baylor College of Medicine Human
Genome Sequencing, part of the Rat
Genome Sequencing Consortium
mouse AY682090 [48]
oppossum AAFR03024396 03-JAN-2006, The Broad Institute
of MIT and Harvard.
monkey NW_001124202 Mmul_051212, February 2006 Macaca
(macacca mulatta) mulatta Genome Sequencing
Consortium
chicken NW_060392 [51]
Xenopus tropicalis scaffold 653 DOE Joint Genome Institute,
v4.1
Teleost Fish:
zebrafish CR450691, X85957 Wellcome Trust Sanger Institute [27]
Takifugu rubripes scaffold 3 Version 4, June 2005, The
International Fugu Genome
Consortium
Tetraodon nigroviridis SCAFFOLD 10211 Chromosome 2, The Tetraodon
nigroviridis V7 assembly
(February 2004) from
Genoscope and the Broad
Institute of MIT and Harvard
medaka (Oryzias_latipes) scaffold 1465 National Institute of
Genetics (NIG) and the
University of Tokyo (October 2005)
Goldfish (Carasius auratus) X80802 [68]
Gasterosteus aculeatus DN689753 The Stanford Human Genome
(three spined stickleback) DN683402 Center (submitted 2003),
DN695303 unpublished ESTs.
DN686722
DN680257
DN684040
DN694734
DN682976
DN691753
DN685347
DN681402
DN686085
DN689752
DN680256
DN685346
DN686721
DN686084
DN683401
DN691752
DN684039
DN691083
DN681401
DN694733
DN695302
DN691082
Pimephales promelas DT130195 DOE Joint Genome Institute,
(fathead minnow) DT138893 unpublished (12-JAN-2006)
DT138894
DT140312
DT180381
DT182368
DT191533
DT191534
DT191534
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