Table 13 of
Cameron, Mol Vis 2005;
11:775-791.Table 13 of
Cameron, Mol Vis 2005;
11:775-791.
Table 13. Brain-specific transcripts relative to retina
The fifty most tissue-specific transcripts of zebrafish brain, ranked in descending order, compared to zebrafish retina. The listed gene product is derived from either (a) that reported directly in the GenBank record for the particular accession number or (b) inferred by a combination of Blastn and/or Blastp searches of the nucleotide and/or protein sequences for the accession number.
GenBank log2 accession signal number Gene product ratio --------- ----------------------------------------------------- ------ NM_131005 ependymin (epd) 11.7 BM183359 cornichon-like 7.9 BM026568 EST 7.3 NM_152982 myosin, heavy polypeptide 2 6.8 AW077448 EST 6.6 BI533454 EST 6.5 BM024157 S100 protein, β chain 6.5 AW233684 EST 6.0 NM_178291 isotocin neurophysin (itnp) 6.0 BI428829 EST 6.0 BI428847 phospholemman, isoform b precursor 5.7 AW116170 eukaryotic translation elongation factor 1 γ 5.6 BM071318 transcription factor SOX-21 5.5 BE017532 empty spiracles homolog 2 5.4 NM_130933 zinc finger protein zic1 (zic1) 5.4 NM_131642 cytochrome P450, 19b (cyp19b) 5.4 BI881745 EST 5.3 AF181681 transcription factor Pitx2 (pitx2) 5.3 BC045520 myosin, light polypeptide 2 5.3 NM_131044 engrailed 2a (eng2a) 5.3 BC044206 decorin 5.3 BI982135 EST 5.3 AY326458 zinc finger protein Zic5 (zic5) 5.3 BQ092261 EST 5.2 NM_131090 hairy-related 4 (her4) 5.2 AW282120 EST 5.1 NM_131377 parathyroid hormone receptor 2 (pthr2) 5.0 NM_131280 empty spiracles homeobox 2 (emx2) 5.0 BM070521 fructose-bisphosphate aldolase C (brain-type) 4.9 AW232202 retinal binding protein 4, plasma 4.9 BC045940 EST 4.9 AW203071 EST 4.8 BQ264005 vitellogenin 1 4.8 BG883755 EST 4.7 AL730680 tenascin W 4.7 BQ092295 potassium channel tetramerization domain containing 4 4.7 AL925245 EST 4.7 BG728758 EST 4.6 AW280165 EST 4.6 AF467916 parvalbumin isoform 1c 4.6 BI885239 EST 4.6 AI558292 EST 4.6 NM_131619 myosin, light polypeptide 3 4.6 AW171172 SOX-1 protein 4.6 AW282133 myelin protein zero (p0 gene) 4.6 NM_131144 homeobox C5a (hoxc5a) 4.5 NM_131306 distal-less homeobox gene 5a (dlx5a) 4.5 BI865828 EST 4.5 BQ092288 EST 4.4 AL717344 myosin light chain 1 4.4 |