Table 8 of
Vihtelic, Mol Vis 2005;
11:1083-1100.
Table 8. Abundant transcripts in the retina
Abundantly expressed genes in the zebrafish retinal library are listed according to transcript abundance. Some transcript sequences matched UniGene clusters, but did not match any GenBank entries. Chromosome assignments for some of the expressed genes and the numbers of sequenced clones in each gene cluster (n) are also listed.
Rank Gene name GenBank UniGene Chromosome n ---- ---------------------------------------- ------------ ------- ---------- -- 1 probable ortholog of U6 snRNA associated BC044441 8153 1 82 LSm3 2 lysosomal associated transmembrane 4 β NM_200098 7747 19 20 3 G protein, α polypeptide 1 AY050499 9899 6 15 4 rhodopsin AF109368 354 8 15 5 G protein, α polypeptide 2 NM_131869 9881 8 14 6 G protein, β polypeptide 1-like NM_213481 26330 6 14 7 rod cGMP-specific PDE γ NM_212799 9829 12 13 8 G protein, β polypeptide 3 NM_213202 9922 19 11 9 α synuclein 28755 10 10 G protein, β polypeptide 1 NM_212609 27191 8 9 11 transcribed locus BX294657 44821 7 12 transcribed locus BX248399 45967 7 13 rod cGMP-specific PDE α NM_001007160 9853 6 14 aspartate transaminase NM_213057 28236 13 6 15 G protein, α polypeptide O NM_200828 11706 6 16 N-myc downstream regulated gene 1 NM_200692 8090 6 17 retinal degeneration slow (RDS; NM_200794 12838 6 peripherin) 18 recoverin NM_199964 9871 16 6 19 unidentified transcript 39245 6 20 red-sensitive cone opsin (LWS-1) AB087803 26759 11 5 21 arrestin 3 (X-arrestin) NM_200792 9825 5 22 phosducin 1 BC060908 26950 5 23 rod cGMP-specific PDE γ NM_200785 26340 5 24 cone cGMP-specific PDE α prime NM_200871 9841 12 5 25 glucocorticoid-regulated 9896 19 5 serine/threonine kinase 26 vesicle-associated membrane protein 2 27155 10 5 27 transcribed locus CR385074 11249 5 28 DN901058 similarity 5 29 solute carrier family 21 similarity BC061952 23305 4 30 carboxy peptidase H NM_214810 30853 4 31 stathmin NM_001017850 32371 4 32 polyadenylate binding protein 1 BC047811 12233 4 33 cathepsin F AJ245493 1194 4 34 glutamate decarboxylase AB183390 9917 4 35 musashi BC090916 42454 4 36 tumor differentially expressed 2 NM_199727 7135 20 4 37 ultraviolet-sensitive cone opsin AB087810 8194 4 4 (SWS-1) 38 nuclear factor, interleukin NM_001002218 11060 4 3-regulated 39 histone H2AX 16296 4 40 transcribed locus BX247868 29218 9 4 |