Table 8 of Vihtelic, Mol Vis 2005; 11:1083-1100.


Table 8. Abundant transcripts in the retina

Abundantly expressed genes in the zebrafish retinal library are listed according to transcript abundance. Some transcript sequences matched UniGene clusters, but did not match any GenBank entries. Chromosome assignments for some of the expressed genes and the numbers of sequenced clones in each gene cluster (n) are also listed.

Rank                  Gene name                     GenBank      UniGene   Chromosome   n
----   ----------------------------------------   ------------   -------   ----------   --
  1    probable ortholog of U6 snRNA associated   BC044441       8153           1       82
       LSm3
  2    lysosomal associated transmembrane 4 β     NM_200098      7747          19       20
  3    G protein, α polypeptide 1                 AY050499       9899           6       15
  4    rhodopsin                                  AF109368       354            8       15
  5    G protein, α polypeptide 2                 NM_131869      9881           8       14
  6    G protein, β polypeptide 1-like            NM_213481      26330          6       14
  7    rod cGMP-specific PDE γ                    NM_212799      9829          12       13
  8    G protein, β polypeptide 3                 NM_213202      9922          19       11
  9    α synuclein                                               28755                  10
 10    G protein, β polypeptide 1                 NM_212609      27191          8        9
 11    transcribed locus                          BX294657       44821                   7
 12    transcribed locus                          BX248399       45967                   7
 13    rod cGMP-specific PDE α                    NM_001007160   9853                    6
 14    aspartate transaminase                     NM_213057      28236         13        6
 15    G protein, α polypeptide O                 NM_200828      11706                   6
 16    N-myc downstream regulated gene 1          NM_200692      8090                    6
 17    retinal degeneration slow (RDS;            NM_200794      12838                   6
       peripherin)
 18    recoverin                                  NM_199964      9871          16        6
 19    unidentified transcript                                   39245                   6
 20    red-sensitive cone opsin (LWS-1)           AB087803       26759         11        5
 21    arrestin 3 (X-arrestin)                    NM_200792      9825                    5
 22    phosducin 1                                BC060908       26950                   5
 23    rod cGMP-specific PDE γ                    NM_200785      26340                   5
 24    cone cGMP-specific PDE α prime             NM_200871      9841          12        5
 25    glucocorticoid-regulated                                  9896          19        5
       serine/threonine kinase
 26    vesicle-associated membrane protein 2                     27155         10        5
 27    transcribed locus                          CR385074       11249                   5
 28    DN901058 similarity                                               5
 29    solute carrier family 21 similarity        BC061952       23305                   4
 30    carboxy peptidase H                        NM_214810      30853                   4
 31    stathmin                                   NM_001017850   32371                   4
 32    polyadenylate binding protein 1            BC047811       12233                   4
 33    cathepsin F                                AJ245493       1194                    4
 34    glutamate decarboxylase                    AB183390       9917                    4
 35    musashi                                    BC090916       42454                   4
 36    tumor differentially expressed 2           NM_199727      7135          20        4
 37    ultraviolet-sensitive cone opsin           AB087810       8194           4        4
       (SWS-1)
 38    nuclear factor, interleukin                NM_001002218   11060                   4
       3-regulated
 39    histone H2AX                                              16296                   4
 40    transcribed locus                          BX247868       29218          9        4

Vihtelic, Mol Vis 2005; 11:1083-1100 <http://www.molvis.org/molvis/v11/a127/>
©2005 Molecular Vision <http://www.molvis.org/molvis/>
ISSN 1090-0535