Table 2 of
Vihtelic, Mol Vis 2005;
11:1083-1100.
Table 2. Gene ontology categories for all zebrafish eye library transcripts
Gene functions were assigned to each of the eye library clusters identified with GenBank accession numbers using GeneSifter. The gene ontologies were categorized by molecular function, cellular component, and biological process. The total numbers of genes in the different functional subcategories are listed. The percentages apply to the total number of genes in each category.
Total number % of Ontology of genes total ------------------------- -------- ----- Molecular Function binding 684 36.29 catalytic 466 24.72 signal transduction 105 5.57 transporter 105 5.57 structural 104 5.52 transcription 80 4.24 enzyme regulation 36 1.91 translation 29 1.54 motor activity 11 0.58 antioxidant 4 0.21 nutrient resevoir 1 0.05 function unknown 260 13.79 Cellular Component cytoplasm 253 20.07 nucleus 191 15.15 integral membrane 144 11.42 chromosome/RNPs 76 6.03 inner/outer mitochondrial 37 2.94 plasma membrane 29 2.3 ubiquitin ligase complex 23 1.83 extracellular 23 1.83 metabolic complex 2 0.15 endomembrane 2 0.16 synaptic 2 0.16 peroxisomal/vacuolar 2 0.16 unknown component 476 37.78 Biological Process metabolism 683 41.65 cell growth/maintenance 251 15.3 cell communication 148 9.02 morphogenesis 59 3.59 stimulus response 56 3.41 other processes 33 2.44 embryonic development 26 1.59 stress response 22 1.34 cell death 16 0.98 cell motility 15 0.91 cell differentiation 15 0.91 process regulation 9 0.55 process unknown 307 18.72 |