Table 4 of
Tasheva, Mol Vis 2004;
10:758-772.Table 4 of
Tasheva, Mol Vis 2004;
10:758-772.
Table 4. Proximal promoter sets extracted from Gene2Promoter
Promoter sequences for the proteoglycan genes were extracted from genome sequences for human (Hs), mouse (Mm), and rat (Rn) using Genomatix' Gene2Promoter. Proximal promoter sets, with extracted sequence, locus ID (LocID), organism (Org), chromosomal location (Chr), contig ID, and contig positions are listed. Some of the extracted rat sequences do not have an official symbol annotated by LocusLink (Symbol na). Abbreviations used for the genes follow LocusLink nomenclature: ASPN (asporin), small leucine rich protein 1C, BGN (biglycan), CHAD (chondroadherin), DCN (decorin), DSPG3 (dermatan sulfate proteoglycan 3), Pg-Lb, epiphycan, FMOD (fibromodulin), KERA (keratocan), LUM (lumican), NYX (nyctalopin), OGN (osteoglycin), osteoinductive factor, mimecan, OMD (osteomodulin), osteoadherin, OPTC (opticin), oculoglycan, PRELP (proline arginine rich end leucine rich repeat protein), SLRR2A.
Putative
Gene Symbol LocID Org Chr Contig ID Str. Contig positions Length TSS
----- ------ ------ --- --- --------- ---- ------------------ ------ --------
FMOD FMOD 331 Hs 1 NT_004671 (-) 14675085-14675774 690 564
PRELP PRELP 5549 Hs 1 NT_079622 (+) 33923-34593 671 548
OPTC OPTC 26254 Hs 1 NT_079622 (+) 52276-52876 601 501
FMOD Fmod 14264 Mm 1 NW_000154 (+) 16009060-16009744 685 501
585
PRELP Prelp 116847 Mm 1 NW_000154 (-) 15891829-15892501 673 501
502
526
OPTC Optc 269120 Mm 1 NW_000154 (-) 15877461-15878278 818 501
718
FMOD Fmod 64507 Rn 13 NW_047395 (+) 2159562-2160244 683 576
PRELP Prelp 84400 Rn 13 NW_047395 (-) 2046495-2047160 666 566
OPTC na 304802 Rn 13 NW_047395 (-) 2028701-2029301 601 501
ASPN ASPN 54829 Hs 9 NT_008476 (-) 2565740-2566476 737 501
637
OMD OMD 4958 Hs 9 NT_008476 (-) 2507656-2508265 610 501
OGN OGN 4969 Hs 9 NT_008476 (-) 2487939-2488564 626 518
ASPN Aspn 66695 Mm 13 NW_000075 (+) 9878489-9879091 603 501
503
OMD Omd 27047 Mm 13 NW_000075 (+) 9916743-9917350 608 508
OGN Ogn 18295 Mm 13 NW_000075 (+) 9939392-9940017 626 501
526
ASPN na 306805 Rn 17 NW_047490 (-) 2462636-2463236 601 501
OMD Omd 83717 Rn 17 NW_047490 (-) 2426721-2427329 609
OGN na 291015 Rn 17 NW_047490 (-) 2411032-2411643 612
DCN DCN 1634 Hs 12 NT_19546 (-) 15058688-15059337 650 550
LUM LUM 4060 Hs 12 NT_19546 (-) 14987288-14987985 698 501
KERA KERA 11081 Hs 12 NT_19546 (-) 14933783-14934822 1040 501
DSPG3 DSPG3 1833 Hs 12 NT_19546 (-) 14880840-14881498 659 501
DCN Dcn 13179 Mm 10 NW_000032 (+) 10899310-10899910 601
LUM Lum 17022 Mm 10 NW_000032 (+) 10982193-10982889 697 537
544
564
KERA Kera 16545 Mm 10 NW_000032 (+) 11023517-1102453 1020 894
920
DSPG3 Dspg3 13516 Mm 10 NW_000032 (+) 11064216-11064872 657 557
DCN Dcn 29139 Rn 7 NW_047774 (+) 11454854-11455504 651 501
LUM Lum 81682 Rn 7 NW_047774 (+) 11534201 -11534896 696 596
KERA na 314771 Rn 7 NW_047774 (+) 11572274-11573298 1025
DSPG3 na 314772 Rn 7 NW_047774 (+) 11615311-11615968 658
CHAD CHAD 1101 Hs 17 NT_010783 (-) 7199501-7200101 601 501
CHAD Chad 12643 Mm 11 NW_000040 (+) 6062353-6062953 601 501
CHAD Chad 29195 Rn 10 NW_047337 (+) 8376-8976 601 501
BGN BGN 633 Hs X NT_025965 (+) 111914-112531 618 501
503
NYX NYX 60506 Hs X NT_079573 (+) 4155996-4156596 601 501
NYX Nyx 236690 Mm X NW_042619 (+) 4069343-4069943 601 501
NYX na 302516 Rn X NW_048034 (-) 8864677-8865277 601 501
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