Table 3 of
Mansergh, Mol Vis 2004;
10:490-511.Table 3 of
Mansergh, Mol Vis 2004;
10:490-511.
Table 3. Significant genes: Nine month Sparctm1cam129Sv/Ev/Mf1Gpi-bb lenses versus Mf1Gpi-bb controls
Significant genes included in this table are those giving a significance level of delta=0.5 using SAM and that have a fold change of more than two in 8/10 repetitions. All significant genes are listed here, including those that were not confirmed by PCR. The columns list the GenBank accession number and primer name, and the forward and reverse primer sequences. The primer name is not listed where the EST is uncharacterized, where ESTs correspond to known genes, the gene name is used.
Accession Primer number name Foward primer Reverse primer --------- -------- --------------------------- --------------------------- BG075211 Adfp GAGGGGTTTACTGAGCTTTGACC GATGGCAGGCGACATCTACTC BG086439 Anxa2 CCTGGAGACGGTGATTTTGG CTCTGCTCGTCTGCCCTTTG AU043642 TGTTCTGTCCTCCGTAATCACTC TTTGTAATTGAGTCAGCGCATC BG066868 TTGCCCCTAAACTCAGAGAACG GCATTGATATTCATAAGGGAATTTGG BG066913 GAGAACTTCAGACCAATTTCCC GGGTGTTGGATTTTGTCAAATGC BG067621 GCTCCCAAGATCCAACTACGAG AACGGCTACCACATCCAAGG BG069287 TGAGCAGAAATGAACAGCATGA TTACTTTGAACTACATTGGCTTGG BG069482 TGTGGTACAAGGCTCCGTC CAGTTGGACACGCAGCACAT BG080548 TTTAAGCATATTAGTCAGCGGAGGA GGGCCTCGATCAGAAGGACTTG BG085421 GTGGCAAAGGAGGATGAAGG CCAGGCACCTCAGAAACAAAG BG074814 C1qa CACAGACGGGGATCGTTTATTC CAGCGGATTCCTCATTTTCC BG087868 C1qb GTCCGGCCTAGAAGCATCAC ATCCCTGGGTCCCCTTTCTC AW547306 C1qg TCAGGAACCAGGGTGGACTT CAAGCAGGTCAGCTCCGGAG BG087171 C1r TCCACTGCCACAATCCTTCC GCCAGAAGACCAGCTTCACC BG087429 C3 CCAGCAGGTCATCAAGTCAGG AGATTCTGTGAATGCCCCAAG C79876 C79876 AGAGATGGGTCCTCACAAGCA GGTCAAAGGCTGGCACTGG BG078093 Cbx3 GGACCGTCGTGTAGTGAATGG AACTCTCCGCTGCTGTCTGTG BG069465 Cd63 TCTGCATCTGCTGCTGGAAG GCAGGCCATTACCCATGAGA BG087410 Cd9 CTCTTGTCCCACGCAACTCC CCAGGAAACCAACCAGCATC BG082965 Cdk8 CGTTGGTGTTGCTGATTTGTG GCTCTCCTACTCCCTCTCCTTTG BG087382 CtsD CCTGCCCCACTCACACATAG TACTGCCCACACAGCAAAGG BG087124 Fcgr3 CCAATGGCTACTTCCACCAC GGTCTGCTCCATTTGACACC BG072156 Fgls GTGTAGGGAGGGGCAAGGAG TCGGAAGATGGTGGGTGATG BG085662 Fn1 TTCCATCACCCTCACCAACC GTGGCTGTGGACTTGCTTCC BG088898 Gp49a GGATTGATGGGATGAGCTGTG GCCAGAGGTTGATGGAGAGATG AW550167, Hba-a1 CCACCACCAAGACCTACTTTCC AGGCAAGGAATTTGTCCAGAGA AW551388, BG073468, BG073469, BG074904, BG086243, BG086422 Hba-X GCGGTTAAGAGCATCGACAAC TTCTCAGTCAGGATAGAAGACAGGA Hbb-b1 ACCTGACTGATGCTGAGAAGG CCCTTGAGGCTGTCCAAGTG Hbb-b2 CACCTGACTGATGCTGAGAAGT CCCTTGAGGTTGTCCAGGTTT Hbb-Y TTACTGCTGAGGAAAAGACCCTC AAGTGACTAGCCAAAACAATCA HbbZ TACCTCACACCATGGTTCAC GTACTTGTGGGACAGAGCAT BG070071 Hspb1 GCCTCGAAAGTAACCGGAATG CTGGCAAGCACGAAGAAAGG BG079631 Hspcb CCCAGCTCATGTCCCTCATC GTGCCAGACTTAGCAATGGTTC BG070106 Lcn2 GCCACACTCACCACCCATTC GGCCACCACGGACTACAACC BG064176 Lgals3 TCCCACTCCTAAGGCACACA CAAGTCCTGGTTGAAGCTGACC BG067456 Lyzs CGTGACACTGGGAACATCCT TGGGAAACAGCAGTCGTGTG BG073671 Mfge8 CCACAGCCAACCTGTCAACC TCCCTCTCTGCACACCACAC BG087418 Ms4a6d TGGAATCAGCTTTCCCCAAAC GGGCTAGGCTGCTGTGAACC BG087762 P2rx4 GGAATTGGGACTGGAAGGTG ACGGAATATGGGGCAGAAGG BG085244 plectin TAGCTGCTGAGGGGAACTGG GCTGGAAGGCTGAAGCAGAG BG072730 Ppgb GCTACCTGTTCTCCGCTCTCC TTCGGAAGGCTCTCCACATC C75970 Ppp2cb GGTCACATGAGGCTCTCCAC TTTAACCATGCCAACGGTCTC BG088310 Psap TGCTGGCTGGCTTCTGTAATG CTCCTGGCACTTGGTTCTGG BG084583 Rgs10 GCCACACCCTCTGATGTTCC TCCTAAGAGTCCATCCCTCTCC BG074704 Rnf128 CACAAGCCACACAAAGTAGAAATAAAG ACTAAATCGTAGAACATTGGTAACTGG BG075648 Serping1 CAGTTCCGTCTGCCAGTTCC TGCAGCGACCTTTCCTCTTC BG064722, Smt3h1 GCCATCAAGCAGCAATGGA CACGTTTTCAGCCATGTTGTG BG064723 BG064802, Sparc GCTGTGTTGGAAACGGAGTTG CTTGCCATGTGGGTTCTGACT BG078305, BG072874 BG070062 Spp1 AGCTTGTCCTTGTGGCTGTG TGAAGAGCGGTGAGTCTAAGGAG BG072750 Tgfbi TTTCTCCCCTTAACCCCTTCC GCGACTTGCCCCTGTCTATC BG074617 Tgm2C CACAGGCTTCCACGCTTTTC CACTGCACCAGACCTGTACCC BG075073 Tmsb4x CATGCAAGTTCTTTTCCCTCTC ACGAGCATTGCCTTCTTATTTTAC BG076072 Ugt1a1 AACCTTCCCTGATGGGTGTGG GCCTATGGCTGCCGGAAATG BG068728 Poor quality sequence AW546550 CAGGGACAAAGGAAAGGCATAG CTGCTTGCTGGTGATAGTTGG AW558227 Poor quality sequence BG072494 Poor quality sequence BG086297 Record removed at submitter's request |