Table 3 of
Ida, Mol Vis 2004;
10:439-444.Table 3 of
Ida, Mol Vis 2004;
10:439-444.
Table 3. Characteristic and abundant clones in the RPE/choroid library
All ESTs represented by more than 10 clones in the RPE/choroid library are listed. Characteristic RPE markers are also listed and indicated in red in the description column. Representative GenBank entries are given with chromosomal location and the number of clones identified. The M/H column gives the ratio of frequency of occurrence of each gene in the mouse (M) and human (H) libraries. An asterisk ("*") indicates no clones were found in the human library.
Number
Rank Description GenBank Chromosome of clones M/H
---- ---------------------------- --------- ---------- --------- -----
1 prostaglandin D2 synthase AB006361 2 78 4
2 RGR opsin AF076930 14 68 200
3 transthyretin D89076 18 66 58
4 transferrin NM_133977 9 35 12
5 apolipoprotein E M73490 7 33 19
6 CRALBP NM_020599 7 30 9
7 clusterin AF248057 14 26 2
8 cystatin C M59470 2 26 8
9 dopachrome tautomerase NM_010024 14 25 11
10 tyrosinase-related protein 1 NM_031202 4 24 2
11 elongation factor 1 alpha 1 BC018223 9 23 0.4
12 prosaposin XM_192668 10 21 2
13 IGFBP5 L12447 1 21 2
14 SPARC/osteonectin NM_009242 11 21 4
15 retinol dehydrogenase 5 AF033196 10 20 *
16 ferritin light chain 1 NM_010240 7 20 1
17 basigin D00611 10 19 11
18 Npps2 AF123542 15 18 4
19 Pmel17 NM_021882 10 17 1
20 AIP-6 AF172088 7 16 6
21 cathepsin D NM_009983 4 15 5
22 RPE65 AF410461 3 15 13
23 alpha-tubulin M13445 15 15 26
24 cathepsin B NM_007798 14 13 5
25 ubiquitin C XM_287520 5 12 2
26 TIMP3 AB041611 10 12 1
27 LRAT AF255061 3 11 *
28 ubiquitin B NM_011664 11 11 20
29 solute carrier family 25 XM_134169 8 11 *
30 heat shock protein 1, beta M36829 17 11 2
31 actin, beta, cytoplasmic J04181 5 11 1
32 putative phosphatase NM_008916 11 11 *
33 pyruvate kinase, muscle D38379 9 11 2
34 rhodopsin NM_145383 6 11 10
49 oculospanin NM_145363 11 7 4
52 OTX2 NM_144841 14 7 12
74 peropsin AF012271 3 5 *
2402 MCT3 AF178956 15 1 *
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