Table 2 of
Walter, Mol Vis 2004;
10:186-198.Table 2 of
Walter, Mol Vis 2004;
10:186-198.
Table 2. Similarity analysis of clones without observable embryonic expression patterns
In the second column, Genbank accession numbers are provided for library clones and their corresponding nucleic acid and protein homologs. In column 3, sizes reflect the lengths of nucleic acids that were sequenced, not the entire isolated clones. In column 4, the nucleotide hits from Xenopus laevis ESTs with the highest possibility of a match are listed. Those clones with "no significant hits" do not strongly match the ESTs of any organism. In column 5, the amino acid homologies with the highest possibility of a match are listed. For entries listing a different organism, no X. laevis homology resulted.
Accession
Clone number Size Blastn(EST) Blastx similarity results
----- --------- ------- --------------------- --------------------------------------
B10 BM928872 719 bp no significant hits 75%/68 aa: M. musculus protein similar
to hypothetical H. sapiens protein
FLJ23018 (XP_142204.1)
B37 BM928878 426 bp no significant hits no significant hits
B44 BM928879 389 bp no significant hits no significant hits
B46 BM928880 496 bp no significant hits no significant hits
B70 BM928885 484 bp 94%/114 bp (BJ082718) no significant hits
B97 BM928891 250 bp no significant hits no significant hits
B111 BM928895 1027 bp no significant hits 55%/173 aa: M. musculus protein
similar to collagen alpha 1(VI)
(XP_145160.1)
C46 BM928910 547 bp 99%/510 bp (BJ096409) 80%/80 aa: H. sapiens small nuclear
RNA activating complex polypeptide 1
(NP_003073.1)
C70 BM928915 584 bp 99%/108 bp (BM928985) 93%/38 aa: H. sapiens PHD finger
protein (NM_018288)
H112 BM929008 740 bp 98%/740 bp (AF061727) 97%/245 aa: X. laevis heparin
cofactor II (AAC16323.1)
J007 BM929042 561 bp no significant hits 80%/77 aa: Coturnix japonica
neuroretina-specific protein QNR-71
(CAA63859.1)
J98 BM929077 750 bp 99%/724 bp (CD328639) 88%/174 aa: M. musculus protein
similar to R. norvegicus hydin
(BAC32886.1, NP_808791.1)
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