Table 1 of
Walter, Mol Vis 2004;
10:186-198.Table 1 of
Walter, Mol Vis 2004;
10:186-198.
Table 1. Similarity analysis of clones with observable embryonic expression patterns
In column two, Genbank accession numbers are provided for library clones and their corresponding nucleic acid and protein homologs. In column three, sizes reflect the lengths of nucleic acids that were sequenced, not the entire isolated clones. In column four, the nucleotide hits from Xenopus laevis ESTs with the highest possibility of a match are listed. Those clones with "no significant hits" do not strongly match the ESTs of any organism. In column five, the amino acid homologies with the highest possibility of a match are listed. For entries listing a different organism, no X. laevis homology resulted.
Accession
Clone number Size Blastn(EST) Blastx similarity results
----- --------- ------ --------------------- ------------------------------------------
B63 BM928883 689 bp no significant hits 93%/162 aa: predicted H. sapiens protein
of unknown function (BAA34509)
B81 BM928887 650 bp 99%/590 bp (CA985139) 67%/81 aa: X. laevis CIA, coactivator
independent of AF-2 (AAH42244)
B87 BM928889 682 bp 98%/661 bp (BU913447) 92%/188 aa: H. sapiens 34 kD cofactor
required for Sp1 transcription
activation (NP_004260)
B89 BM928890 737 bp 99%/506 bp (L49412) 96%/154 aa: X. laevis MMP-13,
collagenase 3 (Q10835)
B105 BM928893 694 bp no significant hits no significant hits
B118 BM928896 614 bp no significant hits 70%/192 aa: hypothetical H. sapiens
protein (T46491)
C76 BM928917 589 bp no significant hits 100%/134 aa: X. laevis tiarin (BAB85495.1)
D43 BM928944 490 bp no significant hits no significant hits
E7 BM928956 992 bp 99%/644 bp (BJ096036) 70%/219 aa: R. norvegicus Thiopurine
S-methyltransferase/occludin (AAD17293)
H59 BM928985 746 bp 94%/712 bp (CD327851) 97%/193 aa: H. sapiens PHD finger protein
10 isoform a (NP_060758.1)
H77 BM928996 737 bp 98%/735 bp (BU905447) 98%/219 aa: unknown X. laevis
protein (AAH60029.1)
H84 BM928999 370 bp 99%/261 bp (CB944338) 100%/38 aa: M. musculus MafY/Mt1a
(NP_075616); H. sapiens RNA polymerase
polypepetide K (NP_005025.1)
H97 BM929003 718 bp no significant hits 61%/170 aa: hypothetical H. sapiens zinc
finger protein (NP_612143.1)
H98 BM929004 744 bp 98%/645 bp (BJ637772) 92%/138 aa: X. laevis early mitotic
inhibitor (AAK62272.1)
H151 BM929025 494 bp 99%/460 bp (BE678358) 100%/93 aa: X. laevis Xoom, oocyte
membrane protein (BAA86033)
H163 BM929030 740 bp 96%/586 bp (BJ643944) 86%/137 aa: H. sapiens protein similar
to D. melanogaster CG15881-PB
(XP_059492.3, AAN11634)
H186 BM929039 742 bp 99%/728 bp (BJ619251) 100%/237 aa: X. laevis Mat1 ring
finger (P51951)
J55 BM929059 650 bp 98%/464 bp (BJ073101) 78%/183 aa: H. sapiens testis expressed
sequence 27 (NP_068762.1)
|