Table 2 of Young, Mol Vis 2004; 10:163-176.

Table 2. Extracellular matrix genes identified by microarray analysis

Extracellular matrix genes identified by microarray analysis with present calls in all 6 samples including GenBank Accession number, description of the expressed extracellular matrix gene, gene symbol, and published cytogenetic position.

accession           Extracellular                        Cytogenetic
 number           matrix description          Symbol      position
---------   ------------------------------   --------   -------------
NM_001135   aggrecan 1 (chondroitin          AGC1       15q26.1
            sulfate proteoglycan 1, large
            aggregating proteoglycan,
            antigen identified by
            monoclonal antibody A0122)
NM_001135   NM_001723, 230/240 kDa           BPAG1      6p12-p11
NM_001728   basigin (OK blood group)         BSG        19p13.3
NM_000610   CD44 antigen (homing function    CD44       11p13
            and Indian blood group system)
NM_000493   collagen, type X, alpha          COL10A1    6q21-q22
            1(Schmid metaphyseal
NM_001854   collagen, type XI, alpha 1       COL11A1    1p21
NM_001855   collagen, type XV, alpha 1       COL15A1    9q21-q22
NM_000089   collagen, type I, alpha 2        COL1A2     7q22.1
NM_000090   collagen, type III, alpha 1      COL3A1     2q31
            (Ehlers-Danlos syndrome type
            IV, autosomal dominant)
NM_001846   collagen, type IV, alpha 2       COL4A2     13q34
NM_000393   collagen, type V, alpha 2        COL5A2     2q14-q32
NM_001848   collagen, type VI, alpha 1       COL6A1     21q22.3
NM_001849   collagen, type VI, alpha 2       COL6A2     21q22.3
NM_004369   collagen, type VI, alpha 3       COL6A3     2q37
NM_001850   collagen, type VIII, alpha 1     COL8A1     3q12-q13.1
NM_001853   collagen, type IX, alpha 3       COL9A3     20q13.3
NM_000095   cartilage oligomeric matrix      COMP       19p13.1
            protein (pseudoachondroplasia,
            epiphyseal dysplasia 1,
NM_004385   chondroitin sulfate              CSPG2      5q14.3
            proteoglycan 2 (versican)
NM_001901   connective tissue growth         CTGF       6q23.1
NM_004393   dystroglycan 1                   DAG1       3p21
            glycoprotein 1)
NM_004425   extracellular matrix protein 1   ECM1       1q21
NM_001393   extracellular matrix protein     ECM2       9q22.3
            2, female organ and adipocyte
NM_004105   EGF-containing fibulin-like      EFEMP1     2p16
            extracellular matrix protein 1
NM_016938   EGF-containing fibulin-like      EFEMP2     11q13
            extracellular matrix protein 2
NM_006487   fibulin 1                        FBLN1      22q13.31
NM_001998   fibulin 2                        FBLN2      3p25-p24
NM_006329   fibulin 5                        FBLN5      14q32.1
NM_000138   fibrillin 1 (Marfan syndrome)    FBN1       15q21.1
NM_002023   fibromodulin                     FMOD       1q32
NM_002026   fibronectin 1                    FN1        2q34
NM_002081   glypican 1                       GPC1       2q35-q37
NM_004484   glypican 3                       GPC3       Xq26.1
NM_000426   laminin, alpha 2 (merosin,       LAMA2      6q22-q23
            congenital muscular dystrophy)
NM_000227   laminin, alpha 3                 LAMA3      18q11.2
NM_002290   laminin, alpha 4                 LAMA4      6q21
NM_005560   laminin, alpha 5                 LAMA5      20q13.2-q13.3
NM_002291   laminin, beta 1                  LAMB1      7q22
NM_002292   laminin, beta 2 (laminin S)      LAMB2      3p21
NM_002293   laminin, gamma 1 (formerly       LAMC1      1q31
NM_000428   latent transforming growth       LTBP2      14q24
            factor beta binding protein 2
NM_003573   latent transforming growth       LTBP4      19q13.1-q13.2
            factor beta binding protein 4
NM_002345   lumican                          LUM        12q21.3-q22
NM_005926   microfibrillar-associated        MFAP1      15q15-q21
            protein 1
NM_002404   microfibrillar-associated        MFAP4      17p11.2
            protein 4
NM_012215   meningioma expressed antigen 5   MGEA5      10q24.1-q24.3
NM_000900   matrix Gla protein               MGP        12p13.1-p12.3
NM_004530   matrix metalloproteinase 2       MMP2       16q13-q21
            (gelatinase A, 72 kDa
            gelatinase, 72 kDa type IV
NM_002422   matrix metalloproteinase 3       MMP3       11q22.3
            (stromelysin 1, progelatinase)
NM_002508   nidogen (enactin)                NID        1q43
NM_007361   nidogen 2 (osteonidogen)         NID2       14q21-q22
NM_000917   procollagen-proline,             P4HA1      10q21.3-q23.1
            2-oxoglutarate 4-dioxygenase
            (proline 4-hydroxylase), alpha
            polypeptide I
NM_004199   procollagen-proline,             P4HA2      5q31
            2-oxoglutarate 4-dioxygenase
            (proline 4-hydroxylase), alpha
            polypeptide II
NM_000918   procollagen-proline,             P4HB       17q25
            2-oxoglutarate 4-dioxygenase
            (proline 4-hydroxylase), beta
            polypeptide (protein disulfide
            isomerase; thyroid hormone
            binding protein p55)
NM_002593   procollagen C-endopeptidase      PCOLCE     7q22
NM_000302   procollagen-lysine,              PLOD       1p36.3-p36.2
            2-oxoglutarate 5-dioxygenase
            (lysine hydroxylase,
            Ehlers-Danlos syndrome
            type VI)
NM_002725   proline arginine-rich end        PRELP      1q32
            leucine-rich repeat protein
NM_004587   ribosome binding protein 1       RRBP1      20p12
            homolog 180 kDa (dog)
NM_002639   serine (or cysteine)             SERPINB5   18q21.3
            proteinase inhibitor, clade B
            (ovalbumin), member 5
NM_000112   solute carrier family 26         SLC26A2    5q31-q34
            (sulfate transporter),
            member 2
NM_003102   superoxide dismutase 3,          SOD3       4p16.3-q21
NM_003118   secreted protein, acidic,        SPARC      5q31.3-q32
            cysteine-rich (osteonectin)
NM_000582   secreted phosphoprotein 1        SPP1       4q21-q25
            (osteopontin, bone
            sialoprotein I, early
            T-lymphocyte activation 1)
NM_003247   thrombospondin 2                 THBS2      6q27
NM_003248   thrombospondin 4                 THBS4      5q13
NM_003254   tissue inhibitor of              TIMP1      Xp11.3-p11.23
            metalloproteinase 1 (erythroid
            potentiating activity,
            collagenase inhibitor)
NM_000362   tissue inhibitor of              TIMP3      22q12.3
            metalloproteinase 3 (Sorsby
            fundus dystrophy,
NM_003278   tetranectin (plasminogen         TNA        3p22-p21.3
            binding protein)
NM_002160   tenascin C (hexabrachion)        TNC        9q33

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