rs162562 - SNP

Select item 1625621.

rs162562 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:38070372 (GRCh38)
2:38297515 (GRCh37)
Canonical SPDI:: NC_000002.12:38070371:G:A,NC_000002.12:38070371:G:C,NC_000002.12:38070371:G:T
Gene:: CYP1B1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.227001/64362 (ALFA)
C=0./0 (KOREAN)
G=0.070093/15 (Vietnamese)
G=0.094388/74 (PRJEB37584)
G=0.101528/186 (Korea1K)
G=0.124514/64 (SGDP_PRJ)
G=0.13359/2239 (TOMMO)
G=0.166667/9 (Siberian)
G=0.18/108 (NorthernSweden)
G=0.217593/47 (Qatari)
G=0.227815/878 (ALSPAC)
G=0.241295/1081 (Estonian)
G=0.243528/903 (TWINSUK)
G=0.244489/244 (GoNL)
G=0.280137/1403 (1000Genomes)
G=0.319415/84546 (TOPMED)
G=0.325/13 (GENOME_DK)
G=0.32776/45889 (GnomAD)
G=0.344401/27103 (PAGE_STUDY)
G=0.350423/663 (HapMap)
HGVS:: NC_000002.12:g.38070372G>A, NC_000002.12:g.38070372G>C, NC_000002.12:g.38070372G>T, NC_000002.11:g.38297515G>A, NC_000002.11:g.38297515G>C, NC_000002.11:g.38297515G>T, NG_008386.2:g.10730C>T, NG_008386.2:g.10730C>G, NG_008386.2:g.10730C>A, NM_000104.4:c.*350C>T, NM_000104.4:c.*350C>G, NM_000104.4:c.*350C>A, NM_000104.3:c.*350C>T, NM_000104.3:c.*350C>G, NM_000104.3:c.*350C>A

Select item 3865399752.

rs386539975 has merged into rs162562 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:38070372 (GRCh38)
2:38297515 (GRCh37)
Canonical SPDI:: NC_000002.12:38070371:G:A,NC_000002.12:38070371:G:C,NC_000002.12:38070371:G:T
Gene:: CYP1B1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.227001/64362 (ALFA)
C=0./0 (KOREAN)
G=0.070093/15 (Vietnamese)
G=0.094388/74 (PRJEB37584)
G=0.101528/186 (Korea1K)
G=0.124514/64 (SGDP_PRJ)
G=0.13359/2239 (TOMMO)
G=0.166667/9 (Siberian)
G=0.18/108 (NorthernSweden)
G=0.217593/47 (Qatari)
G=0.227815/878 (ALSPAC)
G=0.241295/1081 (Estonian)
G=0.243528/903 (TWINSUK)
G=0.244489/244 (GoNL)
G=0.280137/1403 (1000Genomes)
G=0.319415/84546 (TOPMED)
G=0.325/13 (GENOME_DK)
G=0.32776/45889 (GnomAD)
G=0.344401/27103 (PAGE_STUDY)
G=0.350423/663 (HapMap)
HGVS:: NC_000002.12:g.38070372G>A, NC_000002.12:g.38070372G>C, NC_000002.12:g.38070372G>T, NC_000002.11:g.38297515G>A, NC_000002.11:g.38297515G>C, NC_000002.11:g.38297515G>T, NG_008386.2:g.10730C>T, NG_008386.2:g.10730C>G, NG_008386.2:g.10730C>A, NM_000104.4:c.*350C>T, NM_000104.4:c.*350C>G, NM_000104.4:c.*350C>A, NM_000104.3:c.*350C>T, NM_000104.3:c.*350C>G, NM_000104.3:c.*350C>A

Select item 577760473.

rs57776047 has merged into rs162562 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:38070372 (GRCh38)
2:38297515 (GRCh37)
Canonical SPDI:: NC_000002.12:38070371:G:A,NC_000002.12:38070371:G:C,NC_000002.12:38070371:G:T
Gene:: CYP1B1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.227001/64362 (ALFA)
C=0./0 (KOREAN)
G=0.070093/15 (Vietnamese)
G=0.094388/74 (PRJEB37584)
G=0.101528/186 (Korea1K)
G=0.124514/64 (SGDP_PRJ)
G=0.13359/2239 (TOMMO)
G=0.166667/9 (Siberian)
G=0.18/108 (NorthernSweden)
G=0.217593/47 (Qatari)
G=0.227815/878 (ALSPAC)
G=0.241295/1081 (Estonian)
G=0.243528/903 (TWINSUK)
G=0.244489/244 (GoNL)
G=0.280137/1403 (1000Genomes)
G=0.319415/84546 (TOPMED)
G=0.325/13 (GENOME_DK)
G=0.32776/45889 (GnomAD)
G=0.344401/27103 (PAGE_STUDY)
G=0.350423/663 (HapMap)
HGVS:: NC_000002.12:g.38070372G>A, NC_000002.12:g.38070372G>C, NC_000002.12:g.38070372G>T, NC_000002.11:g.38297515G>A, NC_000002.11:g.38297515G>C, NC_000002.11:g.38297515G>T, NG_008386.2:g.10730C>T, NG_008386.2:g.10730C>G, NG_008386.2:g.10730C>A, NM_000104.4:c.*350C>T, NM_000104.4:c.*350C>G, NM_000104.4:c.*350C>A, NM_000104.3:c.*350C>T, NM_000104.3:c.*350C>G, NM_000104.3:c.*350C>A

Select item 37701394.

rs3770139 has merged into rs162562 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:38070372 (GRCh38)
2:38297515 (GRCh37)
Canonical SPDI:: NC_000002.12:38070371:G:A,NC_000002.12:38070371:G:C,NC_000002.12:38070371:G:T
Gene:: CYP1B1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.227001/64362 (ALFA)
C=0./0 (KOREAN)
G=0.070093/15 (Vietnamese)
G=0.094388/74 (PRJEB37584)
G=0.101528/186 (Korea1K)
G=0.124514/64 (SGDP_PRJ)
G=0.13359/2239 (TOMMO)
G=0.166667/9 (Siberian)
G=0.18/108 (NorthernSweden)
G=0.217593/47 (Qatari)
G=0.227815/878 (ALSPAC)
G=0.241295/1081 (Estonian)
G=0.243528/903 (TWINSUK)
G=0.244489/244 (GoNL)
G=0.280137/1403 (1000Genomes)
G=0.319415/84546 (TOPMED)
G=0.325/13 (GENOME_DK)
G=0.32776/45889 (GnomAD)
G=0.344401/27103 (PAGE_STUDY)
G=0.350423/663 (HapMap)
HGVS:: NC_000002.12:g.38070372G>A, NC_000002.12:g.38070372G>C, NC_000002.12:g.38070372G>T, NC_000002.11:g.38297515G>A, NC_000002.11:g.38297515G>C, NC_000002.11:g.38297515G>T, NG_008386.2:g.10730C>T, NG_008386.2:g.10730C>G, NG_008386.2:g.10730C>A, NM_000104.4:c.*350C>T, NM_000104.4:c.*350C>G, NM_000104.4:c.*350C>A, NM_000104.3:c.*350C>T, NM_000104.3:c.*350C>G, NM_000104.3:c.*350C>A

Select item 2326305.

rs232630 has merged into rs162562 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:38070372 (GRCh38)
2:38297515 (GRCh37)
Canonical SPDI:: NC_000002.12:38070371:G:A,NC_000002.12:38070371:G:C,NC_000002.12:38070371:G:T
Gene:: CYP1B1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.227001/64362 (ALFA)
C=0./0 (KOREAN)
G=0.070093/15 (Vietnamese)
G=0.094388/74 (PRJEB37584)
G=0.101528/186 (Korea1K)
G=0.124514/64 (SGDP_PRJ)
G=0.13359/2239 (TOMMO)
G=0.166667/9 (Siberian)
G=0.18/108 (NorthernSweden)
G=0.217593/47 (Qatari)
G=0.227815/878 (ALSPAC)
G=0.241295/1081 (Estonian)
G=0.243528/903 (TWINSUK)
G=0.244489/244 (GoNL)
G=0.280137/1403 (1000Genomes)
G=0.319415/84546 (TOPMED)
G=0.325/13 (GENOME_DK)
G=0.32776/45889 (GnomAD)
G=0.344401/27103 (PAGE_STUDY)
G=0.350423/663 (HapMap)
HGVS:: NC_000002.12:g.38070372G>A, NC_000002.12:g.38070372G>C, NC_000002.12:g.38070372G>T, NC_000002.11:g.38297515G>A, NC_000002.11:g.38297515G>C, NC_000002.11:g.38297515G>T, NG_008386.2:g.10730C>T, NG_008386.2:g.10730C>G, NG_008386.2:g.10730C>A, NM_000104.4:c.*350C>T, NM_000104.4:c.*350C>G, NM_000104.4:c.*350C>A, NM_000104.3:c.*350C>T, NM_000104.3:c.*350C>G, NM_000104.3:c.*350C>A

dbSNP